Experiment: Nitrate reduction, replicate A t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_831 and Pf1N1B4_832 are separated by 254 nucleotides Pf1N1B4_832 and Pf1N1B4_833 are separated by 2 nucleotides Pf1N1B4_833 and Pf1N1B4_834 are separated by 62 nucleotides
Pf1N1B4_831 - hypothetical protein, at 952,481 to 952,804
_831
Pf1N1B4_832 - hypothetical protein, at 953,059 to 953,349
_832
Pf1N1B4_833 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 953,352 to 955,886
_833
Pf1N1B4_834 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 955,949 to 957,172
_834
Position (kb) 953
954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.439 kb on - strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.454 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.476 kb on + strand at 952.477 kb on - strand at 952.610 kb on - strand, within Pf1N1B4_831 at 952.802 kb on + strand at 953.595 kb on + strand at 953.596 kb on - strand at 953.723 kb on - strand, within Pf1N1B4_833 at 953.802 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.136 kb on + strand, within Pf1N1B4_833 at 954.137 kb on - strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833 at 954.381 kb on - strand, within Pf1N1B4_833 at 954.558 kb on + strand, within Pf1N1B4_833 at 954.559 kb on - strand, within Pf1N1B4_833 at 954.559 kb on - strand, within Pf1N1B4_833 at 954.559 kb on - strand, within Pf1N1B4_833 at 954.612 kb on + strand, within Pf1N1B4_833 at 954.612 kb on + strand, within Pf1N1B4_833 at 954.612 kb on + strand, within Pf1N1B4_833 at 954.613 kb on - strand, within Pf1N1B4_833 at 954.613 kb on - strand at 954.651 kb on + strand, within Pf1N1B4_833 at 955.271 kb on + strand, within Pf1N1B4_833 at 955.272 kb on - strand, within Pf1N1B4_833 at 955.272 kb on - strand, within Pf1N1B4_833 at 955.549 kb on + strand, within Pf1N1B4_833 at 955.549 kb on + strand, within Pf1N1B4_833 at 955.549 kb on + strand, within Pf1N1B4_833 at 955.550 kb on - strand, within Pf1N1B4_833 at 955.550 kb on - strand, within Pf1N1B4_833 at 955.584 kb on + strand, within Pf1N1B4_833 at 955.585 kb on - strand, within Pf1N1B4_833 at 955.585 kb on - strand, within Pf1N1B4_833 at 955.585 kb on - strand, within Pf1N1B4_833 at 955.773 kb on - strand at 955.773 kb on - strand at 955.950 kb on + strand at 955.951 kb on - strand at 956.085 kb on + strand, within Pf1N1B4_834 at 956.085 kb on + strand, within Pf1N1B4_834 at 956.085 kb on + strand, within Pf1N1B4_834 at 956.085 kb on + strand, within Pf1N1B4_834 at 956.085 kb on + strand, within Pf1N1B4_834 at 956.085 kb on + strand, within Pf1N1B4_834 at 956.086 kb on - strand, within Pf1N1B4_834 at 956.086 kb on - strand, within Pf1N1B4_834 at 956.086 kb on - strand, within Pf1N1B4_834 at 956.086 kb on - strand, within Pf1N1B4_834 at 956.086 kb on - strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.091 kb on + strand, within Pf1N1B4_834 at 956.092 kb on - strand, within Pf1N1B4_834 at 956.092 kb on - strand, within Pf1N1B4_834 at 956.092 kb on - strand, within Pf1N1B4_834 at 956.092 kb on - strand, within Pf1N1B4_834 at 956.092 kb on - strand at 956.092 kb on - strand, within Pf1N1B4_834 at 956.092 kb on - strand, within Pf1N1B4_834 at 956.094 kb on + strand, within Pf1N1B4_834 at 956.095 kb on - strand, within Pf1N1B4_834 at 956.095 kb on - strand, within Pf1N1B4_834 at 956.248 kb on - strand, within Pf1N1B4_834 at 956.313 kb on + strand, within Pf1N1B4_834 at 956.417 kb on - strand, within Pf1N1B4_834 at 956.419 kb on - strand, within Pf1N1B4_834 at 956.464 kb on + strand, within Pf1N1B4_834 at 956.465 kb on - strand at 956.465 kb on - strand, within Pf1N1B4_834 at 956.465 kb on - strand, within Pf1N1B4_834 at 956.465 kb on - strand, within Pf1N1B4_834 at 956.554 kb on - strand, within Pf1N1B4_834 at 956.554 kb on - strand, within Pf1N1B4_834 at 956.554 kb on - strand, within Pf1N1B4_834 at 956.554 kb on - strand, within Pf1N1B4_834 at 956.554 kb on - strand, within Pf1N1B4_834 at 956.628 kb on + strand, within Pf1N1B4_834 at 956.628 kb on + strand, within Pf1N1B4_834 at 956.628 kb on + strand, within Pf1N1B4_834 at 956.628 kb on + strand, within Pf1N1B4_834 at 956.628 kb on + strand, within Pf1N1B4_834 at 956.628 kb on + strand at 956.629 kb on - strand, within Pf1N1B4_834 at 956.629 kb on - strand, within Pf1N1B4_834 at 956.629 kb on - strand, within Pf1N1B4_834 at 956.629 kb on - strand, within Pf1N1B4_834 at 956.667 kb on + strand, within Pf1N1B4_834 at 956.667 kb on + strand, within Pf1N1B4_834 at 956.667 kb on + strand, within Pf1N1B4_834 at 956.667 kb on + strand at 956.668 kb on - strand, within Pf1N1B4_834 at 956.668 kb on - strand, within Pf1N1B4_834 at 956.668 kb on - strand, within Pf1N1B4_834 at 956.673 kb on + strand, within Pf1N1B4_834 at 956.673 kb on + strand, within Pf1N1B4_834 at 956.673 kb on + strand, within Pf1N1B4_834 at 956.674 kb on - strand, within Pf1N1B4_834 at 956.733 kb on + strand, within Pf1N1B4_834 at 956.736 kb on + strand, within Pf1N1B4_834 at 956.737 kb on - strand, within Pf1N1B4_834 at 956.737 kb on - strand, within Pf1N1B4_834 at 956.737 kb on - strand, within Pf1N1B4_834 at 956.737 kb on - strand, within Pf1N1B4_834 at 956.737 kb on - strand, within Pf1N1B4_834 at 956.737 kb on - strand, within Pf1N1B4_834 at 956.769 kb on + strand, within Pf1N1B4_834 at 956.769 kb on + strand, within Pf1N1B4_834 at 956.770 kb on - strand, within Pf1N1B4_834 at 956.770 kb on - strand, within Pf1N1B4_834 at 956.770 kb on - strand, within Pf1N1B4_834 at 956.832 kb on + strand, within Pf1N1B4_834 at 956.832 kb on + strand, within Pf1N1B4_834 at 956.832 kb on + strand, within Pf1N1B4_834 at 956.832 kb on + strand, within Pf1N1B4_834 at 956.832 kb on + strand, within Pf1N1B4_834 at 956.833 kb on - strand, within Pf1N1B4_834 at 956.833 kb on - strand, within Pf1N1B4_834 at 956.833 kb on - strand, within Pf1N1B4_834 at 956.833 kb on - strand, within Pf1N1B4_834 at 956.833 kb on - strand, within Pf1N1B4_834 at 956.833 kb on - strand, within Pf1N1B4_834
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t2 remove 952,419 + -0.1 952,419 + -0.1 952,419 + -0.1 952,419 + -0.1 952,420 - -0.1 952,420 - -1.5 952,439 - -2.8 952,453 + -2.1 952,453 + -0.1 952,453 + -0.1 952,454 - -0.1 952,466 - -3.1 952,466 - -2.6 952,466 - -0.1 952,476 + -0.1 952,477 - -2.6 952,610 - Pf1N1B4_831 0.40 -0.1 952,802 + -2.2 953,595 + -0.1 953,596 - -0.1 953,723 - Pf1N1B4_833 0.15 -2.4 953,802 + Pf1N1B4_833 0.18 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -1.6 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -1.6 954,053 - Pf1N1B4_833 0.28 -0.1 954,136 + Pf1N1B4_833 0.31 -0.1 954,137 - Pf1N1B4_833 0.31 -2.1 954,184 + Pf1N1B4_833 0.33 -2.3 954,184 + Pf1N1B4_833 0.33 -2.4 954,184 + Pf1N1B4_833 0.33 -0.1 954,184 + Pf1N1B4_833 0.33 -0.1 954,185 - Pf1N1B4_833 0.33 -1.5 954,185 - Pf1N1B4_833 0.33 -0.1 954,332 - Pf1N1B4_833 0.39 -0.1 954,332 - Pf1N1B4_833 0.39 -1.4 954,381 - Pf1N1B4_833 0.41 -1.4 954,558 + Pf1N1B4_833 0.48 -0.1 954,559 - Pf1N1B4_833 0.48 -0.1 954,559 - Pf1N1B4_833 0.48 -1.5 954,559 - Pf1N1B4_833 0.48 -0.1 954,612 + Pf1N1B4_833 0.50 -0.1 954,612 + Pf1N1B4_833 0.50 -0.1 954,612 + Pf1N1B4_833 0.50 -0.1 954,613 - Pf1N1B4_833 0.50 -1.8 954,613 - -0.1 954,651 + Pf1N1B4_833 0.51 -0.1 955,271 + Pf1N1B4_833 0.76 -2.4 955,272 - Pf1N1B4_833 0.76 -0.4 955,272 - Pf1N1B4_833 0.76 -0.6 955,549 + Pf1N1B4_833 0.87 -0.1 955,549 + Pf1N1B4_833 0.87 -2.4 955,549 + Pf1N1B4_833 0.87 -0.1 955,550 - Pf1N1B4_833 0.87 -0.1 955,550 - Pf1N1B4_833 0.87 -0.1 955,584 + Pf1N1B4_833 0.88 -2.3 955,585 - Pf1N1B4_833 0.88 -1.6 955,585 - Pf1N1B4_833 0.88 -2.1 955,585 - Pf1N1B4_833 0.88 -0.1 955,773 - -0.1 955,773 - -0.1 955,950 + -2.1 955,951 - -2.4 956,085 + Pf1N1B4_834 0.11 -0.1 956,085 + Pf1N1B4_834 0.11 -2.9 956,085 + Pf1N1B4_834 0.11 -1.6 956,085 + Pf1N1B4_834 0.11 -0.1 956,085 + Pf1N1B4_834 0.11 -0.1 956,085 + Pf1N1B4_834 0.11 -2.0 956,086 - Pf1N1B4_834 0.11 -3.0 956,086 - Pf1N1B4_834 0.11 -0.1 956,086 - Pf1N1B4_834 0.11 -0.1 956,086 - Pf1N1B4_834 0.11 -3.2 956,086 - Pf1N1B4_834 0.11 -0.1 956,091 + Pf1N1B4_834 0.12 -0.1 956,091 + Pf1N1B4_834 0.12 -0.1 956,091 + Pf1N1B4_834 0.12 -1.6 956,091 + Pf1N1B4_834 0.12 -0.1 956,091 + Pf1N1B4_834 0.12 -0.9 956,091 + Pf1N1B4_834 0.12 -1.4 956,091 + Pf1N1B4_834 0.12 -0.1 956,091 + Pf1N1B4_834 0.12 -1.1 956,091 + Pf1N1B4_834 0.12 -0.1 956,091 + Pf1N1B4_834 0.12 -3.6 956,092 - Pf1N1B4_834 0.12 -0.1 956,092 - Pf1N1B4_834 0.12 -1.3 956,092 - Pf1N1B4_834 0.12 -2.7 956,092 - Pf1N1B4_834 0.12 -0.1 956,092 - -0.1 956,092 - Pf1N1B4_834 0.12 -0.1 956,092 - Pf1N1B4_834 0.12 -1.5 956,094 + Pf1N1B4_834 0.12 -0.1 956,095 - Pf1N1B4_834 0.12 -0.1 956,095 - Pf1N1B4_834 0.12 -1.9 956,248 - Pf1N1B4_834 0.24 -0.1 956,313 + Pf1N1B4_834 0.30 -2.9 956,417 - Pf1N1B4_834 0.38 -0.1 956,419 - Pf1N1B4_834 0.38 -2.6 956,464 + Pf1N1B4_834 0.42 -0.1 956,465 - -0.1 956,465 - Pf1N1B4_834 0.42 -0.6 956,465 - Pf1N1B4_834 0.42 -1.5 956,465 - Pf1N1B4_834 0.42 -2.9 956,554 - Pf1N1B4_834 0.49 -2.1 956,554 - Pf1N1B4_834 0.49 -3.4 956,554 - Pf1N1B4_834 0.49 -0.1 956,554 - Pf1N1B4_834 0.49 -0.1 956,554 - Pf1N1B4_834 0.49 -0.1 956,628 + Pf1N1B4_834 0.55 -0.1 956,628 + Pf1N1B4_834 0.55 -2.2 956,628 + Pf1N1B4_834 0.55 -0.1 956,628 + Pf1N1B4_834 0.55 -0.1 956,628 + Pf1N1B4_834 0.55 -0.1 956,628 + -1.3 956,629 - Pf1N1B4_834 0.56 -2.3 956,629 - Pf1N1B4_834 0.56 -0.1 956,629 - Pf1N1B4_834 0.56 -0.1 956,629 - Pf1N1B4_834 0.56 -0.1 956,667 + Pf1N1B4_834 0.59 +0.9 956,667 + Pf1N1B4_834 0.59 -0.1 956,667 + Pf1N1B4_834 0.59 -0.5 956,667 + -2.3 956,668 - Pf1N1B4_834 0.59 -0.1 956,668 - Pf1N1B4_834 0.59 -0.1 956,668 - Pf1N1B4_834 0.59 -2.9 956,673 + Pf1N1B4_834 0.59 -0.1 956,673 + Pf1N1B4_834 0.59 -0.1 956,673 + Pf1N1B4_834 0.59 -0.1 956,674 - Pf1N1B4_834 0.59 -0.1 956,733 + Pf1N1B4_834 0.64 -0.1 956,736 + Pf1N1B4_834 0.64 -0.1 956,737 - Pf1N1B4_834 0.64 -1.2 956,737 - Pf1N1B4_834 0.64 -0.1 956,737 - Pf1N1B4_834 0.64 -0.1 956,737 - Pf1N1B4_834 0.64 -0.1 956,737 - Pf1N1B4_834 0.64 -2.2 956,737 - Pf1N1B4_834 0.64 -0.6 956,769 + Pf1N1B4_834 0.67 -0.1 956,769 + Pf1N1B4_834 0.67 -0.1 956,770 - Pf1N1B4_834 0.67 -0.1 956,770 - Pf1N1B4_834 0.67 -1.0 956,770 - Pf1N1B4_834 0.67 -2.6 956,832 + Pf1N1B4_834 0.72 -1.7 956,832 + Pf1N1B4_834 0.72 -2.2 956,832 + Pf1N1B4_834 0.72 -0.7 956,832 + Pf1N1B4_834 0.72 -0.1 956,832 + Pf1N1B4_834 0.72 -2.0 956,833 - Pf1N1B4_834 0.72 -0.1 956,833 - Pf1N1B4_834 0.72 -1.1 956,833 - Pf1N1B4_834 0.72 -3.1 956,833 - Pf1N1B4_834 0.72 -2.5 956,833 - Pf1N1B4_834 0.72 -3.4 956,833 - Pf1N1B4_834 0.72 -0.1
Or see this region's nucleotide sequence