Experiment: Nitrate reduction, replicate A t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_831 and Pf1N1B4_832 are separated by 254 nucleotides Pf1N1B4_832 and Pf1N1B4_833 are separated by 2 nucleotides
Pf1N1B4_831 - hypothetical protein, at 952,481 to 952,804
_831
Pf1N1B4_832 - hypothetical protein, at 953,059 to 953,349
_832
Pf1N1B4_833 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 953,352 to 955,886
_833
Position (kb) 953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 952.061 kb on + strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.062 kb on - strand at 952.084 kb on - strand at 952.084 kb on - strand at 952.139 kb on + strand at 952.140 kb on - strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.268 kb on + strand at 952.285 kb on + strand at 952.285 kb on + strand at 952.286 kb on - strand at 952.340 kb on - strand at 952.340 kb on - strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.419 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.439 kb on - strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.453 kb on + strand at 952.454 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.466 kb on - strand at 952.476 kb on + strand at 952.477 kb on - strand at 952.610 kb on - strand, within Pf1N1B4_831 at 952.802 kb on + strand at 953.595 kb on + strand at 953.596 kb on - strand at 953.723 kb on - strand, within Pf1N1B4_833 at 953.802 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.052 kb on + strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.053 kb on - strand, within Pf1N1B4_833 at 954.136 kb on + strand, within Pf1N1B4_833 at 954.137 kb on - strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.184 kb on + strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.185 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833 at 954.332 kb on - strand, within Pf1N1B4_833
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t2 remove 952,061 + -0.1 952,062 - -0.1 952,062 - -0.1 952,062 - -0.1 952,062 - -0.1 952,084 - -0.1 952,084 - -2.0 952,139 + -1.2 952,140 - -0.1 952,268 + -0.1 952,268 + -0.1 952,268 + -0.1 952,268 + -0.1 952,285 + -0.1 952,285 + -0.9 952,286 - -0.1 952,340 - -2.4 952,340 - -1.7 952,419 + -0.1 952,419 + -0.1 952,419 + -0.1 952,419 + -0.1 952,420 - -0.1 952,420 - -1.5 952,439 - -2.8 952,453 + -2.1 952,453 + -0.1 952,453 + -0.1 952,454 - -0.1 952,466 - -3.1 952,466 - -2.6 952,466 - -0.1 952,476 + -0.1 952,477 - -2.6 952,610 - Pf1N1B4_831 0.40 -0.1 952,802 + -2.2 953,595 + -0.1 953,596 - -0.1 953,723 - Pf1N1B4_833 0.15 -2.4 953,802 + Pf1N1B4_833 0.18 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -1.6 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,052 + Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -0.1 954,053 - Pf1N1B4_833 0.28 -1.6 954,053 - Pf1N1B4_833 0.28 -0.1 954,136 + Pf1N1B4_833 0.31 -0.1 954,137 - Pf1N1B4_833 0.31 -2.1 954,184 + Pf1N1B4_833 0.33 -2.3 954,184 + Pf1N1B4_833 0.33 -2.4 954,184 + Pf1N1B4_833 0.33 -0.1 954,184 + Pf1N1B4_833 0.33 -0.1 954,185 - Pf1N1B4_833 0.33 -1.5 954,185 - Pf1N1B4_833 0.33 -0.1 954,332 - Pf1N1B4_833 0.39 -0.1 954,332 - Pf1N1B4_833 0.39 -1.4
Or see this region's nucleotide sequence