Experiment: Nitrate reduction, replicate A t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_573 and Pf1N1B4_574 are separated by 383 nucleotides Pf1N1B4_574 and Pf1N1B4_575 overlap by 4 nucleotides
Pf1N1B4_573 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 666,949 to 667,629
_573
Pf1N1B4_574 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,013 to 668,186
_574
Pf1N1B4_575 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,183 to 669,700
_575
Position (kb) 668
669 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 667.094 kb on + strand, within Pf1N1B4_573 at 667.094 kb on + strand, within Pf1N1B4_573 at 667.094 kb on + strand, within Pf1N1B4_573 at 667.094 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.118 kb on + strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.119 kb on - strand, within Pf1N1B4_573 at 667.304 kb on + strand, within Pf1N1B4_573 at 667.304 kb on + strand, within Pf1N1B4_573 at 667.304 kb on + strand, within Pf1N1B4_573 at 667.304 kb on + strand, within Pf1N1B4_573 at 667.304 kb on + strand, within Pf1N1B4_573 at 667.305 kb on - strand, within Pf1N1B4_573 at 667.305 kb on - strand, within Pf1N1B4_573 at 667.305 kb on - strand at 667.317 kb on + strand, within Pf1N1B4_573 at 667.318 kb on - strand, within Pf1N1B4_573 at 667.422 kb on + strand, within Pf1N1B4_573 at 667.422 kb on + strand, within Pf1N1B4_573 at 667.422 kb on + strand, within Pf1N1B4_573 at 667.423 kb on - strand, within Pf1N1B4_573 at 667.436 kb on + strand, within Pf1N1B4_573 at 667.436 kb on + strand, within Pf1N1B4_573 at 667.436 kb on + strand, within Pf1N1B4_573 at 667.436 kb on + strand, within Pf1N1B4_573 at 667.436 kb on + strand, within Pf1N1B4_573 at 667.436 kb on + strand, within Pf1N1B4_573 at 667.436 kb on + strand, within Pf1N1B4_573 at 667.437 kb on - strand, within Pf1N1B4_573 at 667.437 kb on - strand, within Pf1N1B4_573 at 667.463 kb on + strand, within Pf1N1B4_573 at 667.463 kb on + strand, within Pf1N1B4_573 at 667.463 kb on + strand, within Pf1N1B4_573 at 667.464 kb on - strand, within Pf1N1B4_573 at 667.475 kb on + strand, within Pf1N1B4_573 at 667.475 kb on + strand, within Pf1N1B4_573 at 667.475 kb on + strand at 667.475 kb on + strand, within Pf1N1B4_573 at 667.475 kb on + strand, within Pf1N1B4_573 at 667.475 kb on + strand, within Pf1N1B4_573 at 667.475 kb on + strand, within Pf1N1B4_573 at 667.475 kb on + strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.476 kb on - strand, within Pf1N1B4_573 at 667.554 kb on + strand at 667.554 kb on + strand, within Pf1N1B4_573 at 667.555 kb on - strand, within Pf1N1B4_573 at 667.562 kb on + strand at 667.601 kb on + strand at 667.601 kb on + strand at 667.602 kb on - strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.605 kb on + strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.606 kb on - strand at 667.608 kb on - strand at 667.662 kb on + strand at 667.662 kb on + strand at 667.662 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.680 kb on + strand at 667.681 kb on - strand at 667.681 kb on - strand at 667.683 kb on + strand at 667.683 kb on + strand at 667.683 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.715 kb on + strand at 667.716 kb on - strand at 667.720 kb on + strand at 667.720 kb on + strand at 667.720 kb on + strand at 667.720 kb on + strand at 667.720 kb on + strand at 667.720 kb on + strand at 667.720 kb on + strand at 667.720 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.751 kb on + strand at 667.774 kb on + strand at 667.793 kb on + strand at 667.793 kb on + strand at 667.795 kb on + strand at 667.795 kb on + strand at 667.795 kb on + strand at 667.795 kb on + strand at 667.796 kb on - strand at 667.796 kb on - strand at 667.825 kb on + strand at 667.826 kb on - strand at 667.849 kb on + strand at 667.849 kb on + strand at 667.849 kb on + strand at 667.891 kb on + strand at 667.891 kb on + strand at 667.891 kb on + strand at 667.957 kb on + strand at 667.957 kb on + strand at 667.957 kb on + strand at 667.958 kb on - strand at 668.105 kb on - strand, within Pf1N1B4_574 at 668.128 kb on + strand, within Pf1N1B4_574 at 668.128 kb on + strand, within Pf1N1B4_574 at 668.809 kb on + strand, within Pf1N1B4_575 at 668.809 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.889 kb on + strand, within Pf1N1B4_575 at 668.890 kb on - strand, within Pf1N1B4_575 at 668.890 kb on - strand, within Pf1N1B4_575 at 668.890 kb on - strand, within Pf1N1B4_575 at 668.890 kb on - strand, within Pf1N1B4_575 at 668.890 kb on - strand, within Pf1N1B4_575 at 668.890 kb on - strand at 668.890 kb on - strand, within Pf1N1B4_575 at 668.893 kb on + strand, within Pf1N1B4_575 at 668.893 kb on + strand, within Pf1N1B4_575 at 668.893 kb on + strand, within Pf1N1B4_575 at 668.893 kb on + strand, within Pf1N1B4_575 at 668.893 kb on + strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.894 kb on - strand, within Pf1N1B4_575 at 668.899 kb on - strand, within Pf1N1B4_575 at 668.899 kb on - strand, within Pf1N1B4_575 at 668.899 kb on - strand, within Pf1N1B4_575 at 669.060 kb on + strand, within Pf1N1B4_575 at 669.149 kb on - strand, within Pf1N1B4_575 at 669.149 kb on - strand, within Pf1N1B4_575 at 669.149 kb on - strand, within Pf1N1B4_575 at 669.166 kb on - strand, within Pf1N1B4_575 at 669.166 kb on - strand, within Pf1N1B4_575
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t2 remove 667,094 + Pf1N1B4_573 0.21 -1.9 667,094 + Pf1N1B4_573 0.21 -3.4 667,094 + Pf1N1B4_573 0.21 -0.0 667,094 + Pf1N1B4_573 0.21 -0.0 667,118 + Pf1N1B4_573 0.25 -5.0 667,118 + -0.0 667,118 + Pf1N1B4_573 0.25 -2.2 667,118 + Pf1N1B4_573 0.25 -2.0 667,118 + Pf1N1B4_573 0.25 -0.0 667,118 + Pf1N1B4_573 0.25 -0.0 667,118 + Pf1N1B4_573 0.25 -0.0 667,118 + -0.0 667,118 + Pf1N1B4_573 0.25 -0.0 667,118 + Pf1N1B4_573 0.25 -0.0 667,118 + Pf1N1B4_573 0.25 -0.0 667,118 + Pf1N1B4_573 0.25 -2.0 667,118 + Pf1N1B4_573 0.25 -0.0 667,119 - Pf1N1B4_573 0.25 -0.0 667,119 - Pf1N1B4_573 0.25 -3.0 667,119 - Pf1N1B4_573 0.25 -3.7 667,119 - -1.5 667,119 - Pf1N1B4_573 0.25 -3.0 667,119 - Pf1N1B4_573 0.25 -0.0 667,119 - Pf1N1B4_573 0.25 -2.1 667,119 - Pf1N1B4_573 0.25 -0.0 667,119 - Pf1N1B4_573 0.25 -1.0 667,119 - Pf1N1B4_573 0.25 -0.8 667,119 - Pf1N1B4_573 0.25 -1.4 667,119 - Pf1N1B4_573 0.25 -0.0 667,304 + Pf1N1B4_573 0.52 -0.0 667,304 + Pf1N1B4_573 0.52 -3.3 667,304 + Pf1N1B4_573 0.52 -0.0 667,304 + Pf1N1B4_573 0.52 -0.0 667,304 + Pf1N1B4_573 0.52 -0.0 667,305 - Pf1N1B4_573 0.52 -0.0 667,305 - Pf1N1B4_573 0.52 -0.0 667,305 - -2.3 667,317 + Pf1N1B4_573 0.54 -2.4 667,318 - Pf1N1B4_573 0.54 -1.1 667,422 + Pf1N1B4_573 0.69 -1.3 667,422 + Pf1N1B4_573 0.69 -2.1 667,422 + Pf1N1B4_573 0.69 -0.0 667,423 - Pf1N1B4_573 0.70 -1.2 667,436 + Pf1N1B4_573 0.72 -0.0 667,436 + Pf1N1B4_573 0.72 -0.0 667,436 + Pf1N1B4_573 0.72 -0.0 667,436 + Pf1N1B4_573 0.72 -2.5 667,436 + Pf1N1B4_573 0.72 -0.0 667,436 + Pf1N1B4_573 0.72 -3.4 667,436 + Pf1N1B4_573 0.72 -0.0 667,437 - Pf1N1B4_573 0.72 -0.0 667,437 - Pf1N1B4_573 0.72 -0.0 667,463 + Pf1N1B4_573 0.75 -0.8 667,463 + Pf1N1B4_573 0.75 -0.0 667,463 + Pf1N1B4_573 0.75 -0.0 667,464 - Pf1N1B4_573 0.76 -2.1 667,475 + Pf1N1B4_573 0.77 -0.0 667,475 + Pf1N1B4_573 0.77 -1.9 667,475 + -0.0 667,475 + Pf1N1B4_573 0.77 -0.0 667,475 + Pf1N1B4_573 0.77 -0.0 667,475 + Pf1N1B4_573 0.77 -2.5 667,475 + Pf1N1B4_573 0.77 -0.0 667,475 + Pf1N1B4_573 0.77 -2.3 667,476 - Pf1N1B4_573 0.77 -0.0 667,476 - -0.0 667,476 - Pf1N1B4_573 0.77 -1.7 667,476 - Pf1N1B4_573 0.77 -1.0 667,476 - Pf1N1B4_573 0.77 -1.6 667,476 - Pf1N1B4_573 0.77 -0.0 667,476 - Pf1N1B4_573 0.77 -1.6 667,476 - Pf1N1B4_573 0.77 -0.0 667,476 - Pf1N1B4_573 0.77 -2.5 667,476 - Pf1N1B4_573 0.77 -1.7 667,554 + -1.2 667,554 + Pf1N1B4_573 0.89 -0.0 667,555 - Pf1N1B4_573 0.89 -0.0 667,562 + -0.0 667,601 + -2.4 667,601 + -0.0 667,602 - -0.0 667,605 + -0.0 667,605 + -0.0 667,605 + -0.0 667,605 + -0.0 667,605 + -1.9 667,605 + -1.7 667,605 + -0.6 667,605 + -0.0 667,605 + -1.2 667,605 + -0.0 667,605 + +0.7 667,605 + -2.7 667,605 + -2.6 667,605 + -0.0 667,605 + -2.3 667,606 - -2.0 667,606 - -0.0 667,606 - -0.0 667,606 - -0.0 667,606 - -1.2 667,606 - -2.0 667,606 - -2.1 667,606 - -2.0 667,606 - -3.4 667,608 - -0.0 667,662 + -0.0 667,662 + -0.0 667,662 + -0.0 667,680 + -0.0 667,680 + -3.2 667,680 + -0.0 667,680 + -0.0 667,680 + -0.0 667,680 + -0.0 667,680 + -0.0 667,680 + -1.8 667,680 + -2.1 667,680 + -1.0 667,680 + -0.0 667,681 - -0.0 667,681 - -1.5 667,683 + -0.0 667,683 + -0.0 667,683 + -2.1 667,715 + -1.1 667,715 + -1.9 667,715 + -0.0 667,715 + -0.0 667,715 + -0.0 667,715 + -0.0 667,715 + -3.0 667,715 + -0.0 667,715 + -0.0 667,715 + -1.4 667,715 + -0.0 667,715 + -1.5 667,715 + -0.0 667,715 + -0.0 667,715 + -2.0 667,715 + -3.9 667,716 - -2.0 667,720 + -0.0 667,720 + -3.2 667,720 + +1.0 667,720 + -0.0 667,720 + -0.0 667,720 + -0.9 667,720 + -0.0 667,720 + -2.7 667,751 + -0.0 667,751 + -0.0 667,751 + -1.3 667,751 + -0.0 667,751 + -0.0 667,751 + -0.0 667,751 + -0.0 667,751 + -0.0 667,751 + -0.8 667,774 + -3.0 667,793 + -2.3 667,793 + -0.0 667,795 + -2.5 667,795 + -0.0 667,795 + -0.0 667,795 + -1.0 667,796 - -0.0 667,796 - -0.0 667,825 + -0.0 667,826 - -1.0 667,849 + -0.0 667,849 + -0.0 667,849 + -1.7 667,891 + -1.0 667,891 + -0.0 667,891 + -1.4 667,957 + -2.5 667,957 + -2.0 667,957 + -1.6 667,958 - -1.4 668,105 - Pf1N1B4_574 0.53 -0.0 668,128 + Pf1N1B4_574 0.66 -0.0 668,128 + Pf1N1B4_574 0.66 -3.0 668,809 + Pf1N1B4_575 0.41 -0.0 668,809 + Pf1N1B4_575 0.41 -0.7 668,889 + -0.0 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -0.6 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -3.6 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -1.9 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -4.3 668,889 + Pf1N1B4_575 0.47 -0.0 668,889 + Pf1N1B4_575 0.47 -2.2 668,890 - Pf1N1B4_575 0.47 -1.5 668,890 - Pf1N1B4_575 0.47 -0.0 668,890 - Pf1N1B4_575 0.47 -2.3 668,890 - Pf1N1B4_575 0.47 -0.0 668,890 - Pf1N1B4_575 0.47 -1.3 668,890 - -0.9 668,890 - Pf1N1B4_575 0.47 -0.0 668,893 + Pf1N1B4_575 0.47 -3.2 668,893 + Pf1N1B4_575 0.47 -0.0 668,893 + Pf1N1B4_575 0.47 -2.1 668,893 + Pf1N1B4_575 0.47 -2.4 668,893 + Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -2.0 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - -2.2 668,894 - Pf1N1B4_575 0.47 -1.3 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -2.3 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -0.0 668,894 - Pf1N1B4_575 0.47 -0.0 668,899 - Pf1N1B4_575 0.47 -2.8 668,899 - Pf1N1B4_575 0.47 -0.0 668,899 - Pf1N1B4_575 0.47 -0.0 669,060 + Pf1N1B4_575 0.58 -3.0 669,149 - Pf1N1B4_575 0.64 -1.0 669,149 - Pf1N1B4_575 0.64 -0.0 669,149 - Pf1N1B4_575 0.64 -0.0 669,166 - Pf1N1B4_575 0.65 -0.0 669,166 - Pf1N1B4_575 0.65 -0.0
Or see this region's nucleotide sequence