Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4379

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
4,836,261	-		Pf1N1B4_4378	0.60	-1.8
4,836,292	+		Pf1N1B4_4378	0.61	+0.1
4,836,318	+		Pf1N1B4_4378	0.63	+0.1
4,836,318	+		Pf1N1B4_4378	0.63	-1.2
4,836,318	+		Pf1N1B4_4378	0.63	+0.1
4,836,318	+		Pf1N1B4_4378	0.63	-2.6
4,836,360	+		Pf1N1B4_4378	0.65	+0.1
4,836,392	+		Pf1N1B4_4378	0.66	-2.8
4,836,393	-		Pf1N1B4_4378	0.66	-3.1
4,836,747	-		Pf1N1B4_4378	0.85	+0.1
4,836,866	+				+0.1
4,836,866	+				-1.9
4,836,867	-				-2.7
4,836,974	+				-2.2
4,836,974	+				+0.1
4,837,028	+				+0.1
4,837,069	+				+0.1
4,837,069	+				+0.1
4,837,069	+				-3.9
4,837,069	+				+0.1
4,837,075	+				-2.4
4,837,208	-				-2.6
4,837,609	+		Pf1N1B4_4379	0.69	-0.9
4,837,609	+		Pf1N1B4_4379	0.69	-1.0
4,837,808	+				-1.5
4,837,809	-				-2.4
4,837,809	-				+0.1
4,837,809	-				+0.1
4,837,882	+				-1.5
4,837,882	+				-2.2
4,837,882	+				-0.9
4,837,882	+				+0.1
4,837,883	-				+0.1
4,837,903	+				+0.1
4,837,903	+				-4.0
4,837,904	-				+0.1
4,837,929	-				-1.6
4,837,929	-				-2.1
4,838,065	+		Pf1N1B4_4380	0.21	-1.1
4,838,137	+				+0.1
4,838,137	+				-2.2
4,838,179	+				-0.9
4,838,179	+		Pf1N1B4_4380	0.31	+0.1
4,838,179	+		Pf1N1B4_4380	0.31	+0.1
4,838,180	-				-2.3
4,838,327	-		Pf1N1B4_4380	0.45	+0.1
4,838,649	+		Pf1N1B4_4380	0.75	-0.8
4,838,650	-				+0.1
4,838,650	-		Pf1N1B4_4380	0.75	-1.9
4,838,708	+		Pf1N1B4_4380	0.81	+0.1
4,838,716	+		Pf1N1B4_4380	0.82	-1.0
4,838,789	-		Pf1N1B4_4380	0.88	+0.1
4,838,789	-		Pf1N1B4_4380	0.88	+1.1
4,838,789	-		Pf1N1B4_4380	0.88	+0.1
4,838,789	-		Pf1N1B4_4380	0.88	+0.1