Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4124

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
4,563,564	-				-0.0
4,563,614	-		Pf1N1B4_4122	0.10	-3.4
4,563,664	-				-1.5
4,563,675	-		Pf1N1B4_4122	0.23	-0.0
4,563,675	-		Pf1N1B4_4122	0.23	-2.7
4,563,676	+		Pf1N1B4_4122	0.23	-1.9
4,563,676	+		Pf1N1B4_4122	0.23	-2.6
4,563,676	+		Pf1N1B4_4122	0.23	-0.0
4,563,677	-		Pf1N1B4_4122	0.23	-1.8
4,563,677	-		Pf1N1B4_4122	0.23	-0.0
4,563,677	-		Pf1N1B4_4122	0.23	-2.0
4,563,847	-				-0.0
4,563,847	-		Pf1N1B4_4122	0.57	-0.0
4,563,847	-		Pf1N1B4_4122	0.57	-0.9
4,563,847	-		Pf1N1B4_4122	0.57	-2.4
4,563,904	+		Pf1N1B4_4122	0.68	-2.2
4,563,904	+		Pf1N1B4_4122	0.68	-3.0
4,563,905	-				-0.0
4,563,908	+		Pf1N1B4_4122	0.69	-0.0
4,563,909	-		Pf1N1B4_4122	0.69	-0.0
4,563,944	+		Pf1N1B4_4122	0.76	-4.4
4,563,945	-		Pf1N1B4_4122	0.76	-0.0
4,564,029	+				-1.8
4,564,029	+				-1.4
4,564,036	+				-3.4
4,564,036	+				-1.0
4,564,036	+				-2.5
4,564,041	+				-1.3
4,564,062	+				-1.4
4,564,062	+				-0.0
4,564,063	-				-0.0
4,564,089	+				-0.0
4,564,089	+				-0.0
4,564,089	+				-4.3
4,564,089	+				-0.0
4,564,090	-				-0.0
4,564,090	-				-0.0
4,564,090	-				-2.8
4,564,181	+		Pf1N1B4_4123	0.22	-0.0
4,564,181	+				-0.0
4,564,182	-		Pf1N1B4_4123	0.22	-1.5
4,564,316	+		Pf1N1B4_4123	0.64	-0.6
4,564,316	+		Pf1N1B4_4123	0.64	-2.5
4,564,412	-				-0.0
4,564,412	-				-0.0
4,564,433	+				-2.5
4,564,478	+				-0.0
4,564,478	+				-0.0
4,564,479	-				-3.1
4,564,479	-				-0.0
4,564,788	+		Pf1N1B4_4124	0.69	-0.9
4,564,860	+				-0.0
4,564,861	-				-0.0
4,564,908	-				-0.0
4,564,926	+				-1.9
4,564,926	+				-0.0
4,564,927	-				-0.0
4,564,982	+				-3.0
4,564,983	-				-1.7
4,565,062	-				-0.0
4,565,062	-				-0.0
4,565,062	-				-3.4
4,565,062	-				-0.9
4,565,071	+				-2.7
4,565,071	+				-0.0
4,565,071	+				-0.0
4,565,071	+				-0.0
4,565,071	+				-3.6
4,565,071	+				-1.9
4,565,071	+				-1.1
4,565,071	+				-0.0
4,565,071	+				-1.8
4,565,071	+				-1.9
4,565,071	+				-2.0
4,565,072	-				-2.0
4,565,072	-				-2.1
4,565,072	-				-1.5
4,565,072	-				-1.8
4,565,072	-				-0.0
4,565,072	-				-0.0
4,565,072	-				-0.4
4,565,072	-				-0.0
4,565,072	-				-2.4
4,565,072	-				-0.0
4,565,072	-				-0.3
4,565,072	-				-0.0
4,565,075	+				-0.0
4,565,076	-				-2.1
4,565,076	-				-0.0
4,565,076	-				-0.0
4,565,076	-				-0.0
4,565,076	-				-0.0
4,565,242	-				-3.0
4,565,242	-				-0.0
4,565,242	-				-2.6
4,565,254	-				-1.6
4,565,254	-				-0.0
4,565,254	-				-0.0
4,565,254	-				-0.0
4,565,259	+				-0.0
4,565,312	+				-0.0
4,565,312	+				-0.0
4,565,313	-				-0.0
4,565,313	-				-0.0
4,565,313	-				-0.0
4,565,313	-				-0.0
4,565,313	-				-2.3
4,565,350	-				-0.0
4,565,357	+				-0.0
4,565,358	-				-0.0
4,565,399	+				-0.0
4,565,488	-		Pf1N1B4_4125	0.20	+0.1
4,565,488	-		Pf1N1B4_4125	0.20	-0.0
4,565,488	-		Pf1N1B4_4125	0.20	-0.0
4,565,615	-		Pf1N1B4_4125	0.43	-2.0
4,565,629	-		Pf1N1B4_4125	0.46	-0.0
4,565,629	-		Pf1N1B4_4125	0.46	-0.0
4,565,629	-		Pf1N1B4_4125	0.46	-2.7
4,565,676	-		Pf1N1B4_4125	0.55	-0.0
4,565,846	+				-0.0
4,565,846	+		Pf1N1B4_4125	0.86	-0.0
4,565,847	-		Pf1N1B4_4125	0.86	-1.7
4,565,847	-		Pf1N1B4_4125	0.86	-0.0
4,565,847	-		Pf1N1B4_4125	0.86	-2.8
4,565,847	-		Pf1N1B4_4125	0.86	-0.0