Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4121

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
4,561,837	+				-0.0
4,561,838	-				-1.3
4,561,838	-				-3.6
4,561,838	-				-0.0
4,561,892	+				-0.0
4,561,892	+				-0.8
4,561,892	+				-0.0
4,561,892	+				-0.0
4,561,893	-				-1.8
4,561,893	-				-0.0
4,561,922	+				-2.2
4,561,975	+				-0.0
4,562,079	+				-0.0
4,562,084	+				-0.0
4,562,146	+		Pf1N1B4_4119	0.21	-0.0
4,562,147	-		Pf1N1B4_4119	0.21	-3.5
4,562,185	+		Pf1N1B4_4119	0.34	-0.9
4,562,186	-		Pf1N1B4_4119	0.34	-0.0
4,562,186	-		Pf1N1B4_4119	0.34	-2.2
4,562,279	+		Pf1N1B4_4119	0.64	-0.0
4,562,279	+		Pf1N1B4_4119	0.64	-0.0
4,562,417	+				-0.0
4,562,587	+		Pf1N1B4_4120	0.68	-0.0
4,562,588	-		Pf1N1B4_4120	0.68	-1.6
4,562,646	-				-2.9
4,562,646	-				-0.0
4,562,713	+				-3.5
4,562,714	-				-0.0
4,562,714	-				-0.0
4,562,829	-		Pf1N1B4_4121	0.15	-1.0
4,562,888	-		Pf1N1B4_4121	0.26	-0.0
4,562,888	-		Pf1N1B4_4121	0.26	-3.1
4,562,932	+				-1.9
4,562,932	+				-2.2
4,562,933	-		Pf1N1B4_4121	0.34	-0.0
4,562,933	-				-1.4
4,562,933	-		Pf1N1B4_4121	0.34	-0.4
4,562,936	+		Pf1N1B4_4121	0.34	-0.0
4,562,936	+		Pf1N1B4_4121	0.34	-2.2
4,562,936	+		Pf1N1B4_4121	0.34	-0.0
4,562,937	-		Pf1N1B4_4121	0.35	-1.4
4,562,937	-		Pf1N1B4_4121	0.35	-2.4
4,562,937	-		Pf1N1B4_4121	0.35	-0.0
4,562,937	-				-0.0
4,562,937	-		Pf1N1B4_4121	0.35	-0.0
4,562,937	-		Pf1N1B4_4121	0.35	-1.0
4,562,973	-		Pf1N1B4_4121	0.41	-0.3
4,562,979	-		Pf1N1B4_4121	0.42	-2.0
4,563,026	+		Pf1N1B4_4121	0.51	-1.8
4,563,027	-		Pf1N1B4_4121	0.51	-0.0
4,563,059	-		Pf1N1B4_4121	0.57	-0.0
4,563,059	-		Pf1N1B4_4121	0.57	-0.0
4,563,072	-		Pf1N1B4_4121	0.59	-0.0
4,563,170	+		Pf1N1B4_4121	0.78	-0.0
4,563,306	+				-1.4
4,563,310	-				-1.5
4,563,310	-				-3.0
4,563,398	+				-0.0
4,563,403	+				-0.0
4,563,404	-				-2.3
4,563,413	-				-1.7
4,563,564	-				-0.0
4,563,614	-		Pf1N1B4_4122	0.10	-3.4
4,563,664	-				-1.5
4,563,675	-		Pf1N1B4_4122	0.23	-0.0
4,563,675	-		Pf1N1B4_4122	0.23	-2.7
4,563,676	+		Pf1N1B4_4122	0.23	-1.9
4,563,676	+		Pf1N1B4_4122	0.23	-2.6
4,563,676	+		Pf1N1B4_4122	0.23	-0.0
4,563,677	-		Pf1N1B4_4122	0.23	-1.8
4,563,677	-		Pf1N1B4_4122	0.23	-0.0
4,563,677	-		Pf1N1B4_4122	0.23	-2.0
4,563,847	-				-0.0
4,563,847	-		Pf1N1B4_4122	0.57	-0.0
4,563,847	-		Pf1N1B4_4122	0.57	-0.9
4,563,847	-		Pf1N1B4_4122	0.57	-2.4
4,563,904	+		Pf1N1B4_4122	0.68	-2.2
4,563,904	+		Pf1N1B4_4122	0.68	-3.0
4,563,905	-				-0.0
4,563,908	+		Pf1N1B4_4122	0.69	-0.0
4,563,909	-		Pf1N1B4_4122	0.69	-0.0
4,563,944	+		Pf1N1B4_4122	0.76	-4.4
4,563,945	-		Pf1N1B4_4122	0.76	-0.0
4,564,029	+				-1.8
4,564,029	+				-1.4
4,564,036	+				-3.4
4,564,036	+				-1.0
4,564,036	+				-2.5
4,564,041	+				-1.3
4,564,062	+				-1.4
4,564,062	+				-0.0
4,564,063	-				-0.0
4,564,089	+				-0.0
4,564,089	+				-0.0
4,564,089	+				-4.3
4,564,089	+				-0.0
4,564,090	-				-0.0
4,564,090	-				-0.0
4,564,090	-				-2.8
4,564,181	+		Pf1N1B4_4123	0.22	-0.0
4,564,181	+				-0.0
4,564,182	-		Pf1N1B4_4123	0.22	-1.5