Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3799

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
4,207,253	-		Pf1N1B4_3798	0.13	-2.1
4,207,436	-				-2.0
4,207,531	-		Pf1N1B4_3798	0.41	-0.1
4,207,531	-		Pf1N1B4_3798	0.41	-0.1
4,207,531	-		Pf1N1B4_3798	0.41	-2.1
4,207,531	-		Pf1N1B4_3798	0.41	-0.1
4,207,531	-		Pf1N1B4_3798	0.41	-0.1
4,207,531	-				-0.1
4,207,531	-		Pf1N1B4_3798	0.41	-0.1
4,207,531	-		Pf1N1B4_3798	0.41	-2.5
4,207,548	-		Pf1N1B4_3798	0.43	-2.5
4,207,645	+		Pf1N1B4_3798	0.53	-0.1
4,207,646	-		Pf1N1B4_3798	0.53	-3.1
4,207,646	-		Pf1N1B4_3798	0.53	-0.1
4,207,675	+				-1.1
4,207,675	+		Pf1N1B4_3798	0.56	-0.1
4,207,675	+		Pf1N1B4_3798	0.56	-2.4
4,207,676	-		Pf1N1B4_3798	0.56	-2.2
4,207,676	-		Pf1N1B4_3798	0.56	-0.1
4,207,676	-		Pf1N1B4_3798	0.56	-1.5
4,207,676	-		Pf1N1B4_3798	0.56	-0.6
4,207,676	-		Pf1N1B4_3798	0.56	-2.0
4,207,744	+		Pf1N1B4_3798	0.63	-0.1
4,207,745	-		Pf1N1B4_3798	0.63	-2.2
4,207,781	-		Pf1N1B4_3798	0.67	-0.1
4,207,799	+		Pf1N1B4_3798	0.69	-0.1
4,207,800	-		Pf1N1B4_3798	0.69	-0.1
4,207,800	-		Pf1N1B4_3798	0.69	-0.1
4,208,045	+				-0.8
4,208,048	+				-1.8
4,208,049	-				-0.1
4,208,093	+				-0.1
4,208,117	+				-2.3
4,208,131	-				-0.1
4,208,166	+				-0.1
4,208,202	+				-0.1
4,208,258	+				-0.1
4,208,258	+				-0.1
4,208,258	+				-0.9
4,208,259	-				-3.6
4,208,259	-				-0.1
4,208,421	+		Pf1N1B4_3799	0.24	-2.6
4,208,422	-		Pf1N1B4_3799	0.24	-2.9
4,208,422	-		Pf1N1B4_3799	0.24	-3.1
4,208,737	-		Pf1N1B4_3799	0.68	-0.1
4,208,779	+		Pf1N1B4_3799	0.74	-2.5
4,208,844	+		Pf1N1B4_3799	0.83	-0.1
4,208,845	-		Pf1N1B4_3799	0.83	-1.7
4,208,845	-		Pf1N1B4_3799	0.83	-0.1
4,208,847	-		Pf1N1B4_3799	0.83	-0.1
4,208,859	-		Pf1N1B4_3799	0.85	-3.4
4,208,927	-				-0.1
4,208,950	+				-0.1
4,209,038	+				-0.1
4,209,038	+				-0.1
4,209,081	+				-0.1
4,209,081	+				-3.7
4,209,111	-				-1.6
4,209,185	-				-2.0
4,209,191	+				-2.6
4,209,192	-				-0.1
4,209,192	-				-1.9
4,209,267	-				-0.1
4,209,548	+		Pf1N1B4_3800	0.53	-2.7
4,209,549	-		Pf1N1B4_3800	0.53	-0.1
4,209,692	-		Pf1N1B4_3800	0.74	-0.1
4,209,722	+		Pf1N1B4_3800	0.78	-0.1
4,209,723	-		Pf1N1B4_3800	0.78	+0.9
4,209,854	-				-3.4
4,209,888	-				-0.1
4,209,888	-				-2.3
4,209,890	+				-1.1
4,209,891	-				-1.4
4,209,891	-				-0.1
4,209,928	+				-2.1
4,209,928	+				-0.1