Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3395

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
3,787,953	+				+0.0
3,787,992	+				+0.0
3,787,992	+				+0.0
3,787,993	-				+0.0
3,787,993	-				+0.0
3,788,358	+		Pf1N1B4_3394	0.56	+0.0
3,788,358	+		Pf1N1B4_3394	0.56	+0.0
3,788,359	-		Pf1N1B4_3394	0.57	-2.1
3,788,359	-		Pf1N1B4_3394	0.57	-1.7
3,788,405	-		Pf1N1B4_3394	0.63	+0.0
3,788,405	-		Pf1N1B4_3394	0.63	+0.0
3,788,406	+		Pf1N1B4_3394	0.63	-0.9
3,788,406	+		Pf1N1B4_3394	0.63	-2.5
3,788,406	+				+0.0
3,788,406	+		Pf1N1B4_3394	0.63	-3.7
3,788,406	+		Pf1N1B4_3394	0.63	-1.2
3,788,406	+		Pf1N1B4_3394	0.63	+0.0
3,788,406	+		Pf1N1B4_3394	0.63	+0.0
3,788,406	+		Pf1N1B4_3394	0.63	+0.0
3,788,407	-		Pf1N1B4_3394	0.63	+0.0
3,788,407	-		Pf1N1B4_3394	0.63	+0.0
3,788,407	-		Pf1N1B4_3394	0.63	-2.6
3,788,407	-		Pf1N1B4_3394	0.63	+0.0
3,788,407	-		Pf1N1B4_3394	0.63	-2.0
3,788,407	-		Pf1N1B4_3394	0.63	+0.0
3,788,517	-		Pf1N1B4_3394	0.79	+0.0
3,788,517	-		Pf1N1B4_3394	0.79	+0.0
3,788,662	+				-1.3
3,788,663	-				+0.0
3,788,663	-				+0.0
3,788,663	-				+0.0
3,788,683	+				-2.3
3,788,683	+				+0.0
3,788,683	+				-1.4
3,788,684	-				+0.0
3,788,715	+				+0.0
3,788,715	+				+0.0
3,788,715	+				+0.0
3,788,716	-				+0.0
3,788,736	+				+0.0
3,788,769	+				+0.0
3,788,769	+				+0.0
3,788,769	+				-1.5
3,788,793	-				+0.0
3,788,793	-				-3.0
3,788,820	+				+0.0
3,788,821	-				+0.0
3,788,821	-				+0.0
3,788,821	-				+0.0
3,788,938	-				-1.7
3,788,945	-				+0.0
3,788,976	+				+0.0
3,788,976	+				+0.0
3,788,977	-				-3.0
3,788,977	-				+0.0
3,788,977	-				+0.0
3,788,977	-				-2.1
3,788,977	-				-3.1
3,788,977	-				+0.0
3,788,977	-				+0.0
3,788,977	-				-2.7
3,789,447	+		Pf1N1B4_3395	0.85	+0.0
3,789,504	+				+0.0
3,789,504	+				+0.0
3,789,505	-				-2.7
3,789,603	+				-1.8
3,789,603	+				+0.0
3,789,603	+				+0.0
3,789,604	-				-1.6
3,789,604	-				-2.9
3,789,604	-				+0.0
3,789,604	-				-1.6
3,789,630	+		Pf1N1B4_3396	0.15	-1.4
3,789,631	-		Pf1N1B4_3396	0.15	+0.0
3,789,639	+		Pf1N1B4_3396	0.17	+0.0
3,789,639	+		Pf1N1B4_3396	0.17	+0.0
3,789,640	-		Pf1N1B4_3396	0.17	-2.6
3,790,021	-				-2.4
3,790,110	+				+0.0
3,790,146	+				+0.0
3,790,223	+				+0.0
3,790,224	-				-0.2
3,790,334	+		Pf1N1B4_3397	0.35	-2.3