Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3372

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
3,758,377	+		Pf1N1B4_3370	0.38	+0.0
3,758,377	+		Pf1N1B4_3370	0.38	+0.0
3,758,377	+				-1.7
3,758,377	+		Pf1N1B4_3370	0.38	+0.0
3,758,377	+		Pf1N1B4_3370	0.38	+0.0
3,758,378	-		Pf1N1B4_3370	0.38	-2.0
3,758,378	-		Pf1N1B4_3370	0.38	+0.0
3,758,435	+		Pf1N1B4_3370	0.45	+0.0
3,758,435	+		Pf1N1B4_3370	0.45	-1.0
3,758,436	-		Pf1N1B4_3370	0.45	+0.0
3,758,436	-		Pf1N1B4_3370	0.45	+0.0
3,758,491	+		Pf1N1B4_3370	0.51	+0.0
3,758,491	+		Pf1N1B4_3370	0.51	+0.0
3,758,491	+		Pf1N1B4_3370	0.51	+0.0
3,758,492	-		Pf1N1B4_3370	0.51	+0.0
3,758,492	-		Pf1N1B4_3370	0.51	-2.0
3,758,492	-		Pf1N1B4_3370	0.51	-0.9
3,758,623	+		Pf1N1B4_3370	0.67	+0.0
3,758,738	+		Pf1N1B4_3370	0.80	+0.0
3,758,878	+				-0.6
3,758,879	-				+0.0
3,758,879	-				-4.6
3,758,957	+				+0.0
3,758,957	+				-2.8
3,758,958	-				+0.0
3,758,958	-				+0.0
3,758,958	-				+0.0
3,758,963	+				+0.0
3,758,963	+				+0.0
3,758,964	-				+0.0
3,758,964	-				-1.2
3,758,964	-				-0.7
3,758,967	-				-1.9
3,758,974	+				+0.0
3,758,974	+				-1.6
3,758,975	-				+0.0
3,758,975	-				-2.5
3,758,975	-				-2.3
3,758,975	-				-3.2
3,759,013	+				-1.2
3,759,014	-				-2.2
3,759,014	-				+0.0
3,759,068	+				+0.0
3,759,111	+				-1.7
3,759,111	+				-4.2
3,759,111	+				-1.6
3,759,111	+				+0.0
3,759,112	-				+0.0
3,759,112	-				+0.0
3,759,112	-				-2.1
3,759,114	+				-1.4
3,759,114	+				+0.0
3,759,114	+				+0.0
3,759,114	+				-1.8
3,759,114	+				-1.4
3,759,114	+				+0.0
3,759,114	+				+0.0
3,759,114	+				-1.7
3,759,114	+				+0.0
3,759,114	+				+0.0
3,759,114	+				+0.0
3,759,115	-				-2.0
3,759,115	-				+0.0
3,759,115	-				-1.8
3,759,115	-				+0.0
3,759,115	-				+0.0
3,759,115	-				+0.0
3,759,115	-				-1.7
3,759,115	-				+0.0
3,759,115	-				-1.5
3,759,115	-				-3.5
3,759,115	-				-2.8
3,759,119	-				-1.8
3,759,133	-				-2.2
3,759,328	+				-2.0
3,759,561	+		Pf1N1B4_3372	0.47	+0.0
3,759,561	+		Pf1N1B4_3372	0.47	+0.0
3,759,562	-		Pf1N1B4_3372	0.47	-3.0
3,759,589	+		Pf1N1B4_3372	0.53	-3.3
3,759,606	-		Pf1N1B4_3372	0.56	+0.0
3,759,683	+				+0.0
3,759,920	-				+0.0
3,760,108	-		Pf1N1B4_3373	0.26	+0.0
3,760,377	+		Pf1N1B4_3373	0.51	-2.1
3,760,377	+		Pf1N1B4_3373	0.51	+0.0
3,760,378	-		Pf1N1B4_3373	0.51	-1.4
3,760,378	-		Pf1N1B4_3373	0.51	+0.0
3,760,617	+		Pf1N1B4_3373	0.74	+0.0
3,760,748	+				-4.4
3,760,748	+		Pf1N1B4_3373	0.86	-1.3
3,760,748	+		Pf1N1B4_3373	0.86	+0.0
3,760,748	+		Pf1N1B4_3373	0.86	+0.0
3,760,818	+				-1.9
3,760,819	-				+0.0