Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3284

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
3,670,101	+				-1.7
3,670,101	+				-0.0
3,670,101	+				-0.0
3,670,102	-				-0.0
3,670,102	-				-1.6
3,670,102	-				-0.0
3,670,102	-				-0.0
3,670,102	-				-1.5
3,670,189	+				+0.0
3,670,189	+				+0.0
3,670,190	-				+0.0
3,670,247	+				-3.8
3,670,269	+				+0.0
3,670,269	+				-1.9
3,670,269	+				+0.0
3,670,270	-				+0.0
3,670,274	-				+0.0
3,670,274	-				+0.0
3,670,274	-				+0.0
3,670,373	+		Pf1N1B4_3283	0.16	+0.0
3,670,374	-		Pf1N1B4_3283	0.16	+0.0
3,670,755	+		Pf1N1B4_3283	0.66	+0.0
3,670,755	+		Pf1N1B4_3283	0.66	+0.0
3,670,755	+		Pf1N1B4_3283	0.66	+0.0
3,670,756	-		Pf1N1B4_3283	0.66	-2.9
3,670,758	+		Pf1N1B4_3283	0.66	-1.2
3,670,758	+		Pf1N1B4_3283	0.66	-1.7
3,670,758	+		Pf1N1B4_3283	0.66	-2.7
3,670,759	-		Pf1N1B4_3283	0.66	-1.9
3,670,759	-		Pf1N1B4_3283	0.66	-2.8
3,670,795	+		Pf1N1B4_3283	0.71	+0.0
3,670,795	+		Pf1N1B4_3283	0.71	-3.1
3,670,795	+		Pf1N1B4_3283	0.71	-2.0
3,670,795	+		Pf1N1B4_3283	0.71	+0.0
3,670,795	+		Pf1N1B4_3283	0.71	+0.0
3,670,796	-		Pf1N1B4_3283	0.71	-3.1
3,670,796	-		Pf1N1B4_3283	0.71	+0.0
3,670,796	-		Pf1N1B4_3283	0.71	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	-2.7
3,670,809	+		Pf1N1B4_3283	0.73	-0.5
3,670,809	+		Pf1N1B4_3283	0.73	-1.0
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	-0.3
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	-0.8
3,670,809	+		Pf1N1B4_3283	0.73	-1.9
3,670,809	+		Pf1N1B4_3283	0.73	-1.4
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	+0.0
3,670,809	+		Pf1N1B4_3283	0.73	-1.5
3,670,810	-		Pf1N1B4_3283	0.73	+0.0
3,670,810	-		Pf1N1B4_3283	0.73	+0.0
3,670,810	-		Pf1N1B4_3283	0.73	+0.0
3,670,810	-		Pf1N1B4_3283	0.73	+0.0
3,670,810	-		Pf1N1B4_3283	0.73	-1.8
3,670,810	-		Pf1N1B4_3283	0.73	+0.0
3,670,810	-		Pf1N1B4_3283	0.73	-2.9
3,670,810	-		Pf1N1B4_3283	0.73	+0.0
3,670,812	+		Pf1N1B4_3283	0.73	-2.2
3,670,812	+		Pf1N1B4_3283	0.73	+0.0
3,670,812	+		Pf1N1B4_3283	0.73	+0.0
3,670,812	+		Pf1N1B4_3283	0.73	-0.7
3,670,813	-		Pf1N1B4_3283	0.73	+0.0
3,670,813	-		Pf1N1B4_3283	0.73	+0.0
3,670,813	-		Pf1N1B4_3283	0.73	-3.5
3,670,870	+		Pf1N1B4_3283	0.81	+0.0
3,670,914	+		Pf1N1B4_3283	0.86	+0.0
3,670,914	+		Pf1N1B4_3283	0.86	-2.4
3,670,914	+		Pf1N1B4_3283	0.86	-2.4
3,670,914	+		Pf1N1B4_3283	0.86	+0.0
3,670,915	-		Pf1N1B4_3283	0.87	+0.0
3,670,926	+		Pf1N1B4_3283	0.88	+0.0
3,670,926	+		Pf1N1B4_3283	0.88	+0.0
3,671,021	+				+0.0
3,671,021	+				+0.0
3,671,021	+				+0.0
3,671,021	+				+0.0
3,671,021	+				+0.0
3,671,021	+				-2.0
3,671,022	-				+0.0
3,671,022	-				+0.0
3,671,022	-				-4.1
3,671,150	+		Pf1N1B4_3284	0.18	+0.0
3,671,150	+				+0.0
3,671,151	-		Pf1N1B4_3284	0.19	+0.0
3,671,151	-		Pf1N1B4_3284	0.19	-1.9
3,671,151	-				-3.6
3,671,151	-		Pf1N1B4_3284	0.19	+0.0
3,671,151	-				-0.7
3,671,151	-		Pf1N1B4_3284	0.19	+0.0
3,671,151	-		Pf1N1B4_3284	0.19	-1.6
3,671,151	-		Pf1N1B4_3284	0.19	-0.5
3,671,154	+		Pf1N1B4_3284	0.19	+0.0
3,671,154	+		Pf1N1B4_3284	0.19	+1.0
3,671,154	+		Pf1N1B4_3284	0.19	-2.6
3,671,155	-		Pf1N1B4_3284	0.20	-2.5
3,671,155	-		Pf1N1B4_3284	0.20	-5.3
3,671,179	-		Pf1N1B4_3284	0.25	-2.1
3,671,220	+		Pf1N1B4_3284	0.36	+0.0
3,671,221	-				+0.0
3,671,221	-		Pf1N1B4_3284	0.36	+0.0
3,671,522	+				-1.7
3,671,522	+				+0.0
3,671,522	+				+0.0
3,671,522	+				-2.9
3,671,522	+				+0.0
3,671,523	-				+0.0
3,671,523	-				-2.9
3,671,523	-				-1.5
3,671,523	-				-2.3
3,671,523	-				+0.0
3,671,542	+		Pf1N1B4_3285	0.13	-2.0
3,671,543	-		Pf1N1B4_3285	0.13	-2.7
3,671,653	-		Pf1N1B4_3285	0.74	-3.1
3,671,727	-				-2.2
3,671,729	+				+0.0
3,671,729	+				+0.0
3,671,729	+				-2.2
3,671,729	+				+0.0
3,671,730	-				-2.4
3,671,732	-				-3.5
3,671,732	-				-3.5
3,671,811	+				+0.0
3,671,811	+				-3.9
3,671,812	-				-2.0
3,671,812	-				+0.0
3,671,855	-				+0.0
3,671,908	-				+0.0
3,671,959	-				+0.0
3,671,959	-				+0.0
3,671,959	-				-2.9
3,671,959	-				-1.1
3,671,959	-				+0.0
3,671,959	-				+0.0
3,671,959	-				-1.4
3,671,959	-				+0.0
3,671,959	-				-2.2
3,671,965	+				-1.8
3,671,966	-				+0.0
3,671,966	-				-1.6
3,671,966	-				+0.0
3,671,997	-				+0.0
3,671,997	-				+0.0
3,671,998	+		Pf1N1B4_3286	0.10	+0.0
3,671,998	+		Pf1N1B4_3286	0.10	+0.0
3,671,998	+		Pf1N1B4_3286	0.10	-2.0
3,671,998	+		Pf1N1B4_3286	0.10	+0.0
3,671,999	-		Pf1N1B4_3286	0.10	-0.9
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,671,999	-				-2.9
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,671,999	-		Pf1N1B4_3286	0.10	+0.0
3,672,065	-		Pf1N1B4_3286	0.30	+0.0
3,672,065	-		Pf1N1B4_3286	0.30	+0.0
3,672,065	-		Pf1N1B4_3286	0.30	+0.0
3,672,065	-		Pf1N1B4_3286	0.30	+0.0
3,672,098	-		Pf1N1B4_3286	0.40	-2.7
3,672,334	-				+0.0
3,672,334	-				+0.0
3,672,334	-				+0.0
3,672,334	-				+0.0
3,672,334	-				-2.1
3,672,334	-				+0.0
3,672,334	-				+0.0
3,672,399	-				+0.0
3,672,399	-				+0.0
3,672,400	+				-1.6
3,672,401	-				+0.0
3,672,455	-				+0.0
3,672,469	+				-3.2
3,672,469	+				+0.0
3,672,470	-				+0.0
3,672,470	-				+0.0
3,672,470	-				+0.0