Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3181

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
3,562,487	+		Pf1N1B4_3180	0.42	+0.0
3,562,488	-		Pf1N1B4_3180	0.42	+0.0
3,562,488	-		Pf1N1B4_3180	0.42	+0.0
3,562,488	-		Pf1N1B4_3180	0.42	+0.0
3,562,617	-		Pf1N1B4_3180	0.50	+0.0
3,562,668	+		Pf1N1B4_3180	0.53	-1.2
3,562,895	-		Pf1N1B4_3180	0.66	+0.0
3,562,931	-		Pf1N1B4_3180	0.69	+0.0
3,563,236	+		Pf1N1B4_3180	0.87	-1.9
3,563,237	-		Pf1N1B4_3180	0.87	+0.0
3,563,237	-		Pf1N1B4_3180	0.87	+0.0
3,563,341	+				-1.4
3,563,341	+				-2.0
3,563,341	+				+0.0
3,563,341	+				+0.0
3,563,342	-				+0.0
3,563,383	+				+0.0
3,563,383	+				+0.0
3,563,383	+				+0.0
3,563,383	+				+0.0
3,563,383	+				+0.0
3,563,383	+				-1.5
3,563,384	-				+0.0
3,563,384	-				-2.2
3,563,384	-				+0.0
3,563,384	-				-1.1
3,563,384	-				+0.0
3,563,384	-				+0.0
3,563,384	-				+0.0
3,563,384	-				+0.0
3,563,384	-				+0.0
3,563,384	-				-2.2
3,563,384	-				+0.0
3,563,440	+				+0.0
3,563,440	+				-1.0
3,563,440	+				-0.9
3,563,440	+				+0.0
3,563,441	-				+0.0
3,563,441	-				-0.4
3,563,441	-				+0.0
3,563,441	-				+0.0
3,563,441	-				+0.0
3,563,441	-				-1.1
3,563,489	+				+0.0
3,563,489	+				-0.5
3,563,490	-				-3.1
3,563,490	-				-1.1
3,563,490	-				+0.0
3,563,562	+				+0.0
3,563,701	+		Pf1N1B4_3181	0.23	-1.9
3,563,702	-		Pf1N1B4_3181	0.23	-1.5
3,563,742	+		Pf1N1B4_3181	0.27	+0.0
3,563,742	+		Pf1N1B4_3181	0.27	+0.0
3,563,742	+		Pf1N1B4_3181	0.27	-1.0
3,563,742	+				+0.0
3,563,743	-		Pf1N1B4_3181	0.27	-2.0
3,563,830	+		Pf1N1B4_3181	0.36	-1.0
3,563,844	+		Pf1N1B4_3181	0.37	+0.0
3,563,844	+		Pf1N1B4_3181	0.37	+0.0
3,563,844	+		Pf1N1B4_3181	0.37	-1.7
3,563,844	+		Pf1N1B4_3181	0.37	-3.7
3,563,845	-		Pf1N1B4_3181	0.37	+0.0
3,563,845	-		Pf1N1B4_3181	0.37	+0.0
3,563,845	-		Pf1N1B4_3181	0.37	+0.0
3,563,862	+		Pf1N1B4_3181	0.39	-0.9
3,563,862	+				+0.0
3,563,862	+		Pf1N1B4_3181	0.39	+0.0
3,563,862	+				+0.0
3,563,863	-		Pf1N1B4_3181	0.39	-2.1
3,563,863	-		Pf1N1B4_3181	0.39	+0.0
3,563,863	-		Pf1N1B4_3181	0.39	-0.9
3,563,863	-		Pf1N1B4_3181	0.39	+0.0
3,563,863	-		Pf1N1B4_3181	0.39	-2.0
3,563,912	+		Pf1N1B4_3181	0.43	+0.0
3,563,912	+		Pf1N1B4_3181	0.43	-1.7
3,563,912	+				+0.0
3,563,912	+				-1.9
3,563,912	+				+0.0
3,563,913	-		Pf1N1B4_3181	0.43	+0.0
3,563,913	-		Pf1N1B4_3181	0.43	+0.0
3,563,976	+		Pf1N1B4_3181	0.50	-0.7
3,563,976	+		Pf1N1B4_3181	0.50	-2.1
3,563,976	+		Pf1N1B4_3181	0.50	+0.0
3,563,977	-		Pf1N1B4_3181	0.50	-1.3
3,563,977	-		Pf1N1B4_3181	0.50	-1.8
3,563,977	-		Pf1N1B4_3181	0.50	+0.0
3,564,106	+		Pf1N1B4_3181	0.62	+0.0
3,564,106	+		Pf1N1B4_3181	0.62	-3.3
3,564,106	+		Pf1N1B4_3181	0.62	+0.0
3,564,159	+		Pf1N1B4_3181	0.67	-1.5
3,564,159	+		Pf1N1B4_3181	0.67	-0.8
3,564,159	+		Pf1N1B4_3181	0.67	+0.0
3,564,159	+		Pf1N1B4_3181	0.67	+0.0
3,564,204	-		Pf1N1B4_3181	0.71	+0.0
3,564,204	-		Pf1N1B4_3181	0.71	+0.0
3,564,204	-		Pf1N1B4_3181	0.71	-2.2
3,564,221	+		Pf1N1B4_3181	0.73	-3.2
3,564,221	+		Pf1N1B4_3181	0.73	+0.0
3,564,222	-		Pf1N1B4_3181	0.73	-1.8
3,564,222	-		Pf1N1B4_3181	0.73	-2.2
3,564,222	-		Pf1N1B4_3181	0.73	+0.0
3,564,251	+		Pf1N1B4_3181	0.76	+0.0
3,564,252	-		Pf1N1B4_3181	0.76	+0.0
3,564,252	-		Pf1N1B4_3181	0.76	+0.0
3,564,354	+		Pf1N1B4_3181	0.86	-2.4
3,564,354	+		Pf1N1B4_3181	0.86	+0.0
3,564,354	+		Pf1N1B4_3181	0.86	+0.0
3,564,355	-		Pf1N1B4_3181	0.86	-2.5
3,564,355	-		Pf1N1B4_3181	0.86	-1.2
3,564,355	-		Pf1N1B4_3181	0.86	+0.0
3,564,355	-		Pf1N1B4_3181	0.86	-3.4
3,564,355	-		Pf1N1B4_3181	0.86	+0.0
3,564,355	-		Pf1N1B4_3181	0.86	-0.5
3,564,435	+				+0.0
3,564,435	+				-2.5
3,564,435	+				-1.4
3,564,435	+				+0.0
3,564,435	+				+0.0
3,564,435	+				-0.4
3,564,435	+				-2.3
3,564,435	+				+0.0
3,564,435	+				+0.0
3,564,435	+				+0.0
3,564,436	-				-2.2
3,564,436	-				-1.9
3,564,456	+				+0.0
3,564,456	+				-2.1
3,564,456	+				+0.0
3,564,517	+				-1.2
3,564,517	+				-3.2
3,564,550	-				-0.9
3,564,550	-				+0.0
3,564,745	+				+0.0
3,564,745	+				+0.0
3,564,745	+				+0.0
3,564,745	+				+0.0
3,564,746	-				-2.0
3,564,746	-				-1.0
3,564,746	-				-2.3
3,564,746	-				+0.0
3,564,823	+				+0.0
3,564,823	+				-0.9
3,564,823	+				+0.0
3,564,823	+				-1.6
3,564,823	+				+0.0
3,564,823	+				+0.0
3,564,823	+				+0.0
3,564,823	+				+0.0
3,564,823	+				+0.0
3,564,824	-				+0.0
3,564,824	-				-1.9
3,564,824	-				+0.0
3,564,824	-				+0.0
3,564,824	-				-1.5
3,564,859	+				-2.7
3,564,860	-				+0.0
3,565,073	-		Pf1N1B4_3182	0.13	+0.0
3,565,360	+		Pf1N1B4_3182	0.25	-1.3
3,565,360	+		Pf1N1B4_3182	0.25	+0.0
3,565,360	+		Pf1N1B4_3182	0.25	+0.0
3,565,361	-		Pf1N1B4_3182	0.25	-2.8
3,565,361	-		Pf1N1B4_3182	0.25	+0.0
3,565,361	-		Pf1N1B4_3182	0.25	+0.0
3,565,418	+		Pf1N1B4_3182	0.27	+0.0
3,565,418	+				+0.0
3,565,418	+		Pf1N1B4_3182	0.27	-2.1
3,565,420	+		Pf1N1B4_3182	0.28	+0.0
3,565,420	+		Pf1N1B4_3182	0.28	-2.0
3,565,420	+		Pf1N1B4_3182	0.28	+0.0
3,565,420	+		Pf1N1B4_3182	0.28	+0.0
3,565,420	+		Pf1N1B4_3182	0.28	-1.4
3,565,421	-		Pf1N1B4_3182	0.28	-1.0
3,565,421	-		Pf1N1B4_3182	0.28	+0.0