Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2980

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
3,339,918	+				-0.0
3,339,919	-				-0.8
3,339,919	-				-1.7
3,339,951	+		Pf1N1B4_2979	0.12	-0.0
3,339,951	+		Pf1N1B4_2979	0.12	-0.0
3,339,952	-		Pf1N1B4_2979	0.12	-2.5
3,340,236	+		Pf1N1B4_2979	0.43	-0.0
3,340,236	+		Pf1N1B4_2979	0.43	-0.0
3,340,236	+		Pf1N1B4_2979	0.43	-2.5
3,340,237	-		Pf1N1B4_2979	0.44	-0.0
3,340,532	+		Pf1N1B4_2979	0.76	-0.0
3,340,532	+		Pf1N1B4_2979	0.76	-1.3
3,340,532	+		Pf1N1B4_2979	0.76	-0.0
3,340,533	-		Pf1N1B4_2979	0.76	-0.0
3,340,551	+		Pf1N1B4_2979	0.78	-0.0
3,340,551	+		Pf1N1B4_2979	0.78	-0.0
3,340,551	+		Pf1N1B4_2979	0.78	-2.7
3,340,552	-		Pf1N1B4_2979	0.78	-0.0
3,340,552	-		Pf1N1B4_2979	0.78	-0.0
3,340,555	-		Pf1N1B4_2979	0.79	-0.0
3,340,555	-		Pf1N1B4_2979	0.79	-0.0
3,340,601	-		Pf1N1B4_2979	0.84	-0.0
3,340,715	+				-2.7
3,340,715	+				-0.0
3,340,715	+				-0.0
3,340,715	+				-0.0
3,340,715	+				-0.0
3,340,715	+				-2.7
3,340,715	+				-3.2
3,340,715	+				-0.0
3,340,716	-				-2.1
3,340,716	-				-0.0
3,340,716	-				-0.0
3,340,716	-				-1.2
3,340,716	-				-1.1
3,340,716	-				-1.2
3,340,716	-				-3.4
3,340,719	+				-2.6
3,340,720	-				-3.4
3,340,790	-				-3.6
3,340,790	-				-0.0
3,340,812	+				-4.3
3,340,812	+				-0.0
3,340,830	+				-0.0
3,340,830	+				-2.6
3,340,830	+				-1.3
3,340,830	+				-0.0
3,340,831	-				-0.0
3,340,831	-				-0.0
3,340,831	-				-2.9
3,340,877	+				-0.8
3,340,877	+				-0.0
3,340,877	+				-2.1
3,340,877	+				-1.9
3,340,878	-				-0.0
3,340,878	-				-0.0
3,340,878	-				-3.1
3,340,878	-				-1.7
3,340,878	-				-1.0
3,340,878	-				-1.5
3,340,878	-				-0.0
3,340,878	-				-2.5
3,341,057	+		Pf1N1B4_2980	0.18	-0.0
3,341,057	+		Pf1N1B4_2980	0.18	-0.0
3,341,058	-		Pf1N1B4_2980	0.18	-4.4
3,341,058	-		Pf1N1B4_2980	0.18	-0.0
3,341,320	+		Pf1N1B4_2980	0.40	-0.0
3,341,321	-		Pf1N1B4_2980	0.40	-2.7
3,341,321	-		Pf1N1B4_2980	0.40	-0.0
3,341,608	+		Pf1N1B4_2980	0.64	-0.0
3,342,030	+				-2.4
3,342,031	-				-1.5
3,342,039	+				-0.0
3,342,039	+				-3.6
3,342,039	+				-0.5
3,342,039	+				-2.6
3,342,039	+				-3.1
3,342,040	-				-2.0
3,342,040	-				-3.8
3,342,040	-				-1.5
3,342,040	-				-2.3
3,342,040	-				-1.2
3,342,054	+				-0.0
3,342,055	-				-2.6
3,342,078	-				-0.0
3,342,248	+		Pf1N1B4_2981	0.30	-0.0
3,342,269	-		Pf1N1B4_2981	0.34	-1.6
3,342,280	+		Pf1N1B4_2981	0.36	-1.7
3,342,281	-		Pf1N1B4_2981	0.36	-0.0
3,342,321	+		Pf1N1B4_2981	0.43	-0.0
3,342,322	-		Pf1N1B4_2981	0.43	-0.0
3,342,483	+		Pf1N1B4_2981	0.72	-1.8
3,342,533	-		Pf1N1B4_2981	0.81	-2.2
3,342,533	-		Pf1N1B4_2981	0.81	-0.0
3,342,729	+				-0.0
3,342,729	+				-0.0
3,342,729	+				-0.0
3,342,730	-				-0.0
3,342,730	-				-0.0
3,342,733	+				-0.0
3,342,733	+				-1.1
3,342,886	-		Pf1N1B4_2982	0.12	-0.0
3,343,001	+		Pf1N1B4_2982	0.18	-1.4
3,343,001	+		Pf1N1B4_2982	0.18	-0.0
3,343,001	+		Pf1N1B4_2982	0.18	-0.0
3,343,001	+		Pf1N1B4_2982	0.18	-0.0
3,343,001	+		Pf1N1B4_2982	0.18	-0.0
3,343,002	-		Pf1N1B4_2982	0.18	-2.0
3,343,002	-		Pf1N1B4_2982	0.18	-0.0
3,343,008	+		Pf1N1B4_2982	0.18	-0.0
3,343,008	+		Pf1N1B4_2982	0.18	-0.0
3,343,009	-		Pf1N1B4_2982	0.18	-0.0
3,343,020	+				-1.8
3,343,020	+		Pf1N1B4_2982	0.19	-0.0
3,343,021	-		Pf1N1B4_2982	0.19	-0.0
3,343,021	-		Pf1N1B4_2982	0.19	-0.0
3,343,021	-		Pf1N1B4_2982	0.19	-2.0