Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2773

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
3,110,952	+		Pf1N1B4_2771	0.83	-2.9
3,110,953	-		Pf1N1B4_2771	0.84	-0.0
3,110,953	-		Pf1N1B4_2771	0.84	-3.0
3,110,953	-		Pf1N1B4_2771	0.84	-4.2
3,111,136	+				-4.7
3,111,136	+				-0.0
3,111,136	+				-0.0
3,111,136	+				-0.0
3,111,136	+				-0.0
3,111,136	+				-0.0
3,111,136	+				-2.4
3,111,136	+				-2.9
3,111,136	+				-2.4
3,111,136	+				-0.0
3,111,136	+				-2.2
3,111,136	+				-0.0
3,111,136	+				-0.0
3,111,137	-				-0.0
3,111,137	-				-3.5
3,111,137	-				-3.3
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,137	-				-0.0
3,111,141	+				-3.1
3,111,141	+				-0.0
3,111,141	+				-2.6
3,111,141	+				-0.0
3,111,141	+				-0.0
3,111,141	+				-2.6
3,111,141	+				-0.0
3,111,141	+				-0.0
3,111,141	+				-0.0
3,111,141	+				-0.0
3,111,141	+				-3.1
3,111,141	+				-0.0
3,111,142	-				-2.6
3,111,142	-				-2.5
3,111,142	-				-2.7
3,111,142	-				-0.0
3,111,142	-				-3.9
3,111,142	-				-0.0
3,111,142	-				-2.3
3,111,142	-				-6.7
3,111,142	-				-0.0
3,111,142	-				-0.0
3,111,142	-				-0.0
3,111,151	-				-0.0
3,111,151	-				-0.0
3,111,151	-				-0.0
3,111,239	+				-0.0
3,111,335	-		Pf1N1B4_2772	0.14	-1.1
3,111,335	-		Pf1N1B4_2772	0.14	-0.0
3,111,338	+		Pf1N1B4_2772	0.15	-0.0
3,111,338	+		Pf1N1B4_2772	0.15	-2.1
3,111,380	+		Pf1N1B4_2772	0.36	-3.0
3,111,380	+		Pf1N1B4_2772	0.36	-0.0
3,111,389	+		Pf1N1B4_2772	0.41	-0.1
3,111,389	+		Pf1N1B4_2772	0.41	-0.3
3,111,389	+		Pf1N1B4_2772	0.41	-0.0
3,111,389	+				-1.8
3,111,390	-		Pf1N1B4_2772	0.41	-3.3
3,111,390	-		Pf1N1B4_2772	0.41	-0.0
3,111,390	-		Pf1N1B4_2772	0.41	-0.0
3,111,390	-		Pf1N1B4_2772	0.41	-0.0
3,111,390	-		Pf1N1B4_2772	0.41	-0.0
3,111,390	-		Pf1N1B4_2772	0.41	-0.0
3,111,390	-		Pf1N1B4_2772	0.41	-0.0
3,111,390	-		Pf1N1B4_2772	0.41	-3.6
3,111,390	-		Pf1N1B4_2772	0.41	-2.2
3,111,400	+		Pf1N1B4_2772	0.46	-0.0
3,111,400	+		Pf1N1B4_2772	0.46	-0.0
3,111,400	+		Pf1N1B4_2772	0.46	-1.8
3,111,400	+		Pf1N1B4_2772	0.46	-0.0
3,111,400	+		Pf1N1B4_2772	0.46	-0.0
3,111,400	+		Pf1N1B4_2772	0.46	-0.7
3,111,400	+		Pf1N1B4_2772	0.46	-0.0
3,111,401	-		Pf1N1B4_2772	0.47	-0.0
3,111,401	-		Pf1N1B4_2772	0.47	-1.0
3,111,401	-				-0.0
3,111,437	+		Pf1N1B4_2772	0.65	-0.0
3,111,641	+				-2.0
3,111,642	-				-5.4
3,111,642	-				-0.0
3,111,687	-				-5.2
3,111,901	+		Pf1N1B4_2773	0.24	-0.0
3,111,902	-		Pf1N1B4_2773	0.24	-0.0
3,111,902	-		Pf1N1B4_2773	0.24	-0.0
3,111,902	-		Pf1N1B4_2773	0.24	-0.0
3,112,030	+		Pf1N1B4_2773	0.37	-0.0
3,112,030	+		Pf1N1B4_2773	0.37	-0.0
3,112,031	-		Pf1N1B4_2773	0.37	-0.0
3,112,049	+		Pf1N1B4_2773	0.39	-5.5
3,112,049	+		Pf1N1B4_2773	0.39	-0.0
3,112,049	+		Pf1N1B4_2773	0.39	-5.5
3,112,049	+		Pf1N1B4_2773	0.39	-5.2
3,112,050	-		Pf1N1B4_2773	0.39	-0.0
3,112,050	-		Pf1N1B4_2773	0.39	-5.7
3,112,447	+		Pf1N1B4_2773	0.80	-4.1
3,112,448	-		Pf1N1B4_2773	0.80	-0.0
3,112,748	-				-0.0
3,112,748	-				-0.0
3,112,748	-				-0.0
3,112,891	+				-3.7
3,112,920	-				-2.5
3,112,998	+		Pf1N1B4_2774	0.36	-2.5
3,113,002	+		Pf1N1B4_2774	0.39	-0.0
3,113,002	+		Pf1N1B4_2774	0.39	-2.0
3,113,053	+		Pf1N1B4_2774	0.73	-0.0
3,113,053	+		Pf1N1B4_2774	0.73	-0.0
3,113,054	-		Pf1N1B4_2774	0.73	-0.0
3,113,054	-				-2.4
3,113,107	+				-1.3
3,113,107	+				-1.8
3,113,107	+				-0.0
3,113,108	-				-2.1
3,113,139	+				-0.0
3,113,139	+				-0.0
3,113,139	+				-1.7
3,113,139	+				-0.0
3,113,139	+				-1.2
3,113,140	-				-2.2
3,113,140	-				-0.0
3,113,140	-				-0.0
3,113,140	-				-0.0
3,113,140	-				-0.0
3,113,166	-				-0.8
3,113,211	-				-1.1
3,113,211	-				-0.0
3,113,229	+				-0.0
3,113,229	+				-1.9
3,113,271	-				-0.6
3,113,323	-				-1.8
3,113,391	-				-1.9
3,113,453	-		Pf1N1B4_2775	0.11	-0.0
3,113,506	-		Pf1N1B4_2775	0.12	-1.2
3,113,561	-		Pf1N1B4_2775	0.14	-2.6