Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2634

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
2,971,655	+		Pf1N1B4_2633	0.56	-0.0
2,971,655	+		Pf1N1B4_2633	0.56	-1.8
2,971,655	+		Pf1N1B4_2633	0.56	-0.0
2,971,656	-		Pf1N1B4_2633	0.56	-0.0
2,971,656	-		Pf1N1B4_2633	0.56	-0.0
2,971,656	-		Pf1N1B4_2633	0.56	-2.6
2,971,656	-		Pf1N1B4_2633	0.56	-2.6
2,971,913	+		Pf1N1B4_2633	0.78	-0.0
2,971,913	+		Pf1N1B4_2633	0.78	-0.0
2,971,913	+		Pf1N1B4_2633	0.78	-0.0
2,971,914	-		Pf1N1B4_2633	0.78	-0.0
2,972,045	+		Pf1N1B4_2633	0.88	-0.0
2,972,046	-		Pf1N1B4_2633	0.89	-0.0
2,972,046	-		Pf1N1B4_2633	0.89	-1.6
2,972,103	+				-0.0
2,972,103	+				-1.4
2,972,103	+				-0.0
2,972,103	+				-2.9
2,972,103	+				-1.3
2,972,103	+				-3.8
2,972,103	+				-0.0
2,972,103	+				-1.0
2,972,104	-				-0.0
2,972,104	-				-0.0
2,972,104	-				-1.3
2,972,104	-				-0.0
2,972,104	-				-2.3
2,972,108	-				-1.1
2,972,108	-				-0.0
2,972,108	-				-0.0
2,972,108	-				-0.0
2,972,108	-				-0.0
2,972,248	+				-0.0
2,972,249	-				-0.0
2,972,350	+				-0.0
2,972,443	+				-0.0
2,972,443	+				-0.0
2,972,460	+				-0.0
2,972,460	+				-0.0
2,972,460	+				-0.0
2,972,460	+				-0.0
2,972,460	+				-0.0
2,972,461	-				-0.0
2,972,461	-				-0.0
2,972,461	-				-1.9
2,972,461	-				-0.0
2,972,461	-				-0.0
2,972,463	+				-0.0
2,972,463	+				-1.7
2,972,463	+				-3.3
2,972,463	+				-0.0
2,972,464	-				-0.0
2,972,464	-				-0.0
2,972,573	+				-0.0
2,972,748	-				-0.0
2,973,115	-		Pf1N1B4_2634	0.11	-1.7
2,973,478	+		Pf1N1B4_2634	0.20	-1.7
2,973,478	+		Pf1N1B4_2634	0.20	-0.0
2,973,478	+		Pf1N1B4_2634	0.20	-0.0
2,973,479	-		Pf1N1B4_2634	0.20	-1.2
2,973,479	-		Pf1N1B4_2634	0.20	-0.0
2,973,479	-		Pf1N1B4_2634	0.20	-2.1
2,973,479	-		Pf1N1B4_2634	0.20	-1.5
2,973,562	+		Pf1N1B4_2634	0.22	-4.3
2,973,562	+		Pf1N1B4_2634	0.22	-0.0
2,973,562	+				-2.2
2,973,562	+		Pf1N1B4_2634	0.22	-0.0
2,973,563	-		Pf1N1B4_2634	0.22	-0.0
2,973,563	-		Pf1N1B4_2634	0.22	-0.0
2,973,563	-		Pf1N1B4_2634	0.22	-0.0
2,973,588	-		Pf1N1B4_2634	0.23	-1.0
2,973,588	-		Pf1N1B4_2634	0.23	-0.0
2,973,588	-		Pf1N1B4_2634	0.23	-0.0
2,973,588	-		Pf1N1B4_2634	0.23	-0.0
2,973,791	+		Pf1N1B4_2634	0.27	-0.0
2,973,872	+		Pf1N1B4_2634	0.29	-2.2
2,973,872	+		Pf1N1B4_2634	0.29	-0.0
2,973,872	+		Pf1N1B4_2634	0.29	-0.0
2,973,872	+		Pf1N1B4_2634	0.29	-2.2
2,973,872	+		Pf1N1B4_2634	0.29	-0.0
2,973,872	+		Pf1N1B4_2634	0.29	-0.0
2,973,873	-		Pf1N1B4_2634	0.29	-0.0
2,973,873	-		Pf1N1B4_2634	0.29	-0.0
2,973,873	-		Pf1N1B4_2634	0.29	-2.6
2,973,873	-		Pf1N1B4_2634	0.29	-0.0
2,973,923	-		Pf1N1B4_2634	0.31	-0.0
2,974,073	+		Pf1N1B4_2634	0.34	-0.0
2,974,416	-		Pf1N1B4_2634	0.42	-0.0
2,974,416	-		Pf1N1B4_2634	0.42	-3.2
2,974,688	-		Pf1N1B4_2634	0.49	-1.8
2,974,688	-		Pf1N1B4_2634	0.49	-2.8
2,974,707	-		Pf1N1B4_2634	0.49	-3.3
2,974,791	+		Pf1N1B4_2634	0.51	-1.4
2,974,791	+		Pf1N1B4_2634	0.51	-0.0
2,974,791	+		Pf1N1B4_2634	0.51	-0.0
2,974,791	+		Pf1N1B4_2634	0.51	-2.2
2,974,791	+		Pf1N1B4_2634	0.51	-0.0
2,974,791	+		Pf1N1B4_2634	0.51	-1.6
2,974,792	-		Pf1N1B4_2634	0.51	-2.2
2,974,792	-		Pf1N1B4_2634	0.51	-0.0
2,974,792	-		Pf1N1B4_2634	0.51	-0.0
2,974,792	-		Pf1N1B4_2634	0.51	-0.0
2,975,048	-		Pf1N1B4_2634	0.57	-0.0
2,975,048	-		Pf1N1B4_2634	0.57	-0.0
2,975,081	+		Pf1N1B4_2634	0.58	-2.3
2,975,122	+		Pf1N1B4_2634	0.59	-0.0
2,975,123	-		Pf1N1B4_2634	0.59	-0.0
2,975,327	+		Pf1N1B4_2634	0.64	-0.0
2,975,334	+		Pf1N1B4_2634	0.64	-1.7
2,975,334	+		Pf1N1B4_2634	0.64	-0.0
2,975,335	-		Pf1N1B4_2634	0.64	-0.0
2,975,335	-		Pf1N1B4_2634	0.64	-0.0
2,975,335	-		Pf1N1B4_2634	0.64	-0.0
2,975,364	+		Pf1N1B4_2634	0.65	-0.0
2,975,364	+		Pf1N1B4_2634	0.65	-0.5
2,975,432	+		Pf1N1B4_2634	0.66	-0.0
2,975,432	+		Pf1N1B4_2634	0.66	-1.8
2,975,532	-		Pf1N1B4_2634	0.69	-0.0
2,975,562	-		Pf1N1B4_2634	0.70	-0.0
2,975,562	-		Pf1N1B4_2634	0.70	-0.0
2,976,156	-		Pf1N1B4_2634	0.84	-0.0
2,976,156	-		Pf1N1B4_2634	0.84	-0.0
2,976,156	-		Pf1N1B4_2634	0.84	-0.0
2,976,156	-		Pf1N1B4_2634	0.84	-1.8
2,976,156	-		Pf1N1B4_2634	0.84	-0.0
2,976,156	-		Pf1N1B4_2634	0.84	-1.4
2,976,214	+		Pf1N1B4_2634	0.85	-1.8
2,976,214	+		Pf1N1B4_2634	0.85	-2.4
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+				-1.8
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+		Pf1N1B4_2634	0.85	-1.9
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+		Pf1N1B4_2634	0.85	-0.0
2,976,214	+		Pf1N1B4_2634	0.85	-2.3
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-				-2.8
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-		Pf1N1B4_2634	0.85	-2.3
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-		Pf1N1B4_2634	0.85	-2.3
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-		Pf1N1B4_2634	0.85	-2.6
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,215	-		Pf1N1B4_2634	0.85	-0.0
2,976,488	+				-1.0
2,976,488	+				-0.0
2,976,489	-				-0.0
2,976,489	-				-0.0
2,976,489	-				-0.0
2,976,489	-				-1.7
2,976,489	-				-1.3
2,976,882	+				-0.0
2,976,965	-		Pf1N1B4_2635	0.26	-0.8
2,976,965	-		Pf1N1B4_2635	0.26	-0.0
2,976,965	-		Pf1N1B4_2635	0.26	-0.0
2,976,965	-		Pf1N1B4_2635	0.26	-0.0
2,976,992	+		Pf1N1B4_2635	0.39	-2.0
2,977,073	-		Pf1N1B4_2635	0.78	-0.0
2,977,073	-		Pf1N1B4_2635	0.78	-0.0
2,977,127	-				-1.0
2,977,152	+				-2.6
2,977,153	-				-0.0
2,977,153	-				-0.0
2,977,153	-				-1.0
2,977,153	-				-0.0
2,977,153	-				-3.2
2,977,153	-				-0.0
2,977,153	-				-1.8
2,977,153	-				-0.0
2,977,153	-				-3.1
2,977,160	-				-4.3
2,977,210	+				-2.9
2,977,279	+				-1.3
2,977,279	+				-2.7
2,977,279	+				-2.1
2,977,279	+				-2.4
2,977,279	+				-2.6
2,977,294	+				+0.6
2,977,294	+				-1.1
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.5
2,977,294	+				+0.1
2,977,294	+				-0.5
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.3
2,977,294	+				-0.0
2,977,294	+				-4.0
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-2.7
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.4
2,977,294	+				-0.3
2,977,294	+				+0.7
2,977,294	+				-2.7
2,977,294	+				-0.8
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,294	+				-0.0
2,977,299	+				-0.1
2,977,299	+				-0.0
2,977,299	+				-1.4
2,977,459	+				-0.6
2,977,459	+				-0.0
2,977,462	+				-0.0
2,977,462	+				-0.0
2,977,462	+				-0.0
2,977,462	+				-1.6
2,977,462	+				-0.0
2,977,462	+				-0.0
2,977,462	+				-0.0
2,977,462	+				-0.0
2,977,462	+				-0.4
2,977,462	+				-0.2
2,977,462	+				-0.0
2,977,462	+				-0.7
2,977,462	+				-0.7
2,977,462	+				-1.0
2,977,462	+				-0.0
2,977,462	+				-1.0
2,977,462	+				-0.7
2,977,462	+				-2.1
2,977,585	+		Pf1N1B4_2637	0.20	-1.8
2,977,618	+		Pf1N1B4_2637	0.24	-1.8
2,977,618	+		Pf1N1B4_2637	0.24	-0.0