Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1814

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
2,084,067	+		Pf1N1B4_1813	0.63	-1.6
2,084,067	+		Pf1N1B4_1813	0.63	-1.9
2,084,067	+		Pf1N1B4_1813	0.63	+0.0
2,084,068	-		Pf1N1B4_1813	0.63	+0.0
2,084,068	-		Pf1N1B4_1813	0.63	+0.0
2,084,097	+		Pf1N1B4_1813	0.64	+0.0
2,084,123	+		Pf1N1B4_1813	0.65	+0.0
2,084,123	+		Pf1N1B4_1813	0.65	-2.5
2,084,124	-		Pf1N1B4_1813	0.65	+0.0
2,084,124	-		Pf1N1B4_1813	0.65	+0.0
2,084,124	-		Pf1N1B4_1813	0.65	-3.6
2,084,124	-		Pf1N1B4_1813	0.65	+0.0
2,084,206	+		Pf1N1B4_1813	0.69	+0.0
2,084,207	-		Pf1N1B4_1813	0.69	+0.0
2,084,207	-		Pf1N1B4_1813	0.69	+0.0
2,084,262	+		Pf1N1B4_1813	0.71	+0.0
2,084,262	+		Pf1N1B4_1813	0.71	+0.0
2,084,262	+		Pf1N1B4_1813	0.71	-4.1
2,084,262	+		Pf1N1B4_1813	0.71	+0.0
2,084,263	-		Pf1N1B4_1813	0.71	+0.0
2,084,263	-		Pf1N1B4_1813	0.71	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	-1.5
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	-1.9
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,289	+		Pf1N1B4_1813	0.72	-3.7
2,084,289	+		Pf1N1B4_1813	0.72	+0.0
2,084,290	-		Pf1N1B4_1813	0.72	+0.0
2,084,290	-		Pf1N1B4_1813	0.72	-1.3
2,084,290	-		Pf1N1B4_1813	0.72	-1.8
2,084,290	-		Pf1N1B4_1813	0.72	+0.0
2,084,290	-		Pf1N1B4_1813	0.72	+0.0
2,084,290	-		Pf1N1B4_1813	0.72	+0.0
2,084,290	-		Pf1N1B4_1813	0.72	+0.0
2,084,291	+		Pf1N1B4_1813	0.72	+0.0
2,084,298	+		Pf1N1B4_1813	0.72	+0.0
2,084,299	-		Pf1N1B4_1813	0.72	-4.1
2,084,325	+		Pf1N1B4_1813	0.74	-0.7
2,084,391	+		Pf1N1B4_1813	0.76	+0.0
2,084,391	+		Pf1N1B4_1813	0.76	-2.9
2,084,392	-		Pf1N1B4_1813	0.76	-1.2
2,084,484	+		Pf1N1B4_1813	0.80	+0.0
2,084,485	-		Pf1N1B4_1813	0.80	-2.6
2,084,485	-		Pf1N1B4_1813	0.80	+0.0
2,084,571	+		Pf1N1B4_1813	0.83	+0.0
2,084,571	+		Pf1N1B4_1813	0.83	+0.0
2,084,571	+		Pf1N1B4_1813	0.83	+0.0
2,084,572	-		Pf1N1B4_1813	0.83	-1.0
2,084,572	-		Pf1N1B4_1813	0.83	+0.0
2,084,572	-		Pf1N1B4_1813	0.83	+0.0
2,084,572	-		Pf1N1B4_1813	0.83	-2.3
2,084,572	-		Pf1N1B4_1813	0.83	+0.0
2,084,572	-		Pf1N1B4_1813	0.83	-0.2
2,084,592	+		Pf1N1B4_1813	0.84	+0.0
2,084,592	+		Pf1N1B4_1813	0.84	+0.0
2,084,612	+		Pf1N1B4_1813	0.85	+0.0
2,084,612	+		Pf1N1B4_1813	0.85	+0.0
2,084,612	+		Pf1N1B4_1813	0.85	+0.0
2,084,612	+		Pf1N1B4_1813	0.85	-2.0
2,084,613	-		Pf1N1B4_1813	0.85	+0.0
2,084,613	-		Pf1N1B4_1813	0.85	-1.9
2,084,613	-		Pf1N1B4_1813	0.85	+0.0
2,084,678	+		Pf1N1B4_1813	0.88	+0.0
2,084,678	+		Pf1N1B4_1813	0.88	-2.7
2,084,678	+		Pf1N1B4_1813	0.88	+0.0
2,084,678	+		Pf1N1B4_1813	0.88	-4.4
2,084,700	+		Pf1N1B4_1813	0.88	+0.0
2,084,700	+		Pf1N1B4_1813	0.88	+0.0
2,084,700	+		Pf1N1B4_1813	0.88	-2.6
2,084,701	-		Pf1N1B4_1813	0.89	+0.0
2,084,701	-		Pf1N1B4_1813	0.89	+0.0
2,084,754	+				+0.0
2,084,755	-				+0.0
2,084,755	-				+0.0
2,084,833	-				+0.0
2,084,869	+				-0.8
2,084,869	+				+0.0
2,084,869	+				+0.0
2,084,869	+				+0.0
2,084,869	+				+0.0
2,084,869	+				+0.0
2,084,870	-				+0.0
2,084,870	-				+0.0
2,084,904	+				+0.0
2,084,904	+				-3.2
2,084,904	+				-2.0
2,084,904	+				+0.0
2,084,904	+				+0.0
2,084,904	+				-3.2
2,084,904	+				+0.0
2,084,905	-				+0.0
2,084,905	-				+0.0
2,084,905	-				+0.0
2,084,905	-				+0.0
2,084,937	+				+0.0
2,084,937	+				+0.0
2,084,937	+				+0.0
2,084,976	+				+0.0
2,084,977	-				+0.0
2,084,985	+				+0.0
2,085,077	+				+0.0
2,085,078	-				+0.0
2,085,088	+				+0.0
2,085,088	+				+0.0
2,085,089	-				+0.0
2,085,089	-				+0.0
2,085,089	-				+0.0
2,085,089	-				+0.0
2,085,089	-				+0.0
2,085,089	-				-1.7
2,085,132	+				+0.0
2,085,190	+		Pf1N1B4_1814	0.11	+0.0
2,085,190	+		Pf1N1B4_1814	0.11	+0.0
2,085,190	+		Pf1N1B4_1814	0.11	+0.0
2,085,190	+		Pf1N1B4_1814	0.11	-1.1
2,085,190	+		Pf1N1B4_1814	0.11	+0.0
2,085,190	+		Pf1N1B4_1814	0.11	+0.0
2,085,190	+		Pf1N1B4_1814	0.11	+0.0
2,085,190	+		Pf1N1B4_1814	0.11	+0.0
2,085,190	+		Pf1N1B4_1814	0.11	-1.8
2,085,190	+		Pf1N1B4_1814	0.11	-1.8
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,191	-		Pf1N1B4_1814	0.11	-2.3
2,085,191	-		Pf1N1B4_1814	0.11	-2.2
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,191	-		Pf1N1B4_1814	0.11	-2.0
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,191	-		Pf1N1B4_1814	0.11	-1.4
2,085,191	-		Pf1N1B4_1814	0.11	+0.0
2,085,192	+		Pf1N1B4_1814	0.11	-1.3
2,085,193	-		Pf1N1B4_1814	0.11	+0.0
2,085,193	-		Pf1N1B4_1814	0.11	+0.0
2,085,193	-		Pf1N1B4_1814	0.11	+0.0
2,085,193	-		Pf1N1B4_1814	0.11	+0.0
2,085,237	-		Pf1N1B4_1814	0.15	+0.0
2,085,266	+		Pf1N1B4_1814	0.17	+0.0
2,085,267	-		Pf1N1B4_1814	0.17	+0.0
2,085,267	-		Pf1N1B4_1814	0.17	+0.0
2,085,267	-		Pf1N1B4_1814	0.17	+0.0
2,085,277	+		Pf1N1B4_1814	0.18	-2.3
2,085,277	+		Pf1N1B4_1814	0.18	+0.0
2,085,277	+		Pf1N1B4_1814	0.18	+0.0
2,085,277	+		Pf1N1B4_1814	0.18	+0.0
2,085,277	+		Pf1N1B4_1814	0.18	+0.0
2,085,278	-		Pf1N1B4_1814	0.18	+0.0
2,085,278	-		Pf1N1B4_1814	0.18	+0.0
2,085,278	-		Pf1N1B4_1814	0.18	+0.0
2,085,278	-		Pf1N1B4_1814	0.18	+0.0
2,085,287	-		Pf1N1B4_1814	0.19	-1.9
2,085,306	+		Pf1N1B4_1814	0.21	-1.1
2,085,382	+		Pf1N1B4_1814	0.27	-2.1
2,085,383	-		Pf1N1B4_1814	0.27	-1.2
2,085,383	-		Pf1N1B4_1814	0.27	+0.0
2,085,383	-		Pf1N1B4_1814	0.27	+0.0
2,085,383	-		Pf1N1B4_1814	0.27	+0.0
2,085,383	-		Pf1N1B4_1814	0.27	+0.0
2,085,481	+		Pf1N1B4_1814	0.35	+0.0
2,085,482	-		Pf1N1B4_1814	0.35	+0.0
2,085,482	-		Pf1N1B4_1814	0.35	+0.0
2,085,482	-		Pf1N1B4_1814	0.35	+0.0
2,085,501	+		Pf1N1B4_1814	0.37	-1.8
2,085,501	+		Pf1N1B4_1814	0.37	+0.0
2,085,502	-		Pf1N1B4_1814	0.37	+0.0
2,085,834	+		Pf1N1B4_1814	0.65	+0.0
2,085,859	+		Pf1N1B4_1814	0.67	-1.9
2,085,859	+		Pf1N1B4_1814	0.67	+0.0
2,085,860	-		Pf1N1B4_1814	0.67	-2.9
2,085,919	+		Pf1N1B4_1814	0.72	-1.8
2,085,919	+		Pf1N1B4_1814	0.72	+0.0
2,085,919	+		Pf1N1B4_1814	0.72	+0.0
2,085,919	+		Pf1N1B4_1814	0.72	+0.0
2,085,919	+		Pf1N1B4_1814	0.72	+0.1
2,085,919	+		Pf1N1B4_1814	0.72	-1.2
2,085,919	+		Pf1N1B4_1814	0.72	+0.0
2,085,920	-		Pf1N1B4_1814	0.72	-2.0
2,085,920	-		Pf1N1B4_1814	0.72	-1.0
2,085,920	-		Pf1N1B4_1814	0.72	-1.3
2,085,920	-		Pf1N1B4_1814	0.72	-2.0
2,085,920	-		Pf1N1B4_1814	0.72	+0.0
2,085,920	-		Pf1N1B4_1814	0.72	+0.0
2,085,920	-		Pf1N1B4_1814	0.72	+0.0
2,085,920	-		Pf1N1B4_1814	0.72	+0.0
2,085,922	+		Pf1N1B4_1814	0.72	+0.0
2,085,923	-		Pf1N1B4_1814	0.72	+0.0
2,085,923	-		Pf1N1B4_1814	0.72	-2.9
2,085,923	-		Pf1N1B4_1814	0.72	+0.0
2,085,943	+		Pf1N1B4_1814	0.74	+0.0
2,086,139	+				-1.7
2,086,139	+				+0.0
2,086,139	+				+0.0
2,086,139	+				-4.6
2,086,157	+				+0.0
2,086,157	+				-2.0
2,086,158	-				+0.0
2,086,158	-				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				-1.8
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				-2.4
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				-2.4
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				-1.2
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,177	+				+0.0
2,086,178	-				+0.0
2,086,178	-				+0.0
2,086,178	-				-0.7
2,086,178	-				+0.0
2,086,179	+				-2.0
2,086,212	+				+0.0
2,086,213	-				-2.5
2,086,224	+				-1.5
2,086,224	+				+0.0
2,086,224	+				+0.0
2,086,224	+				+0.0
2,086,224	+				+0.0
2,086,224	+				-2.2
2,086,224	+				+0.0
2,086,224	+				+0.0
2,086,225	-				+0.0
2,086,261	+				-1.4
2,086,261	+				-1.4
2,086,261	+				-2.2
2,086,261	+				+0.0
2,086,293	+				+0.0
2,086,294	-				-1.3
2,086,335	-		Pf1N1B4_5187	0.14	+0.0
2,086,335	-		Pf1N1B4_5187	0.14	+0.0
2,086,593	-				-1.9
2,086,595	-				+0.0
2,086,595	-				+0.0