Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1804

Experiment: Nitrate reduction, replicate A t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t2
2,070,642	+				+0.0
2,070,642	+				+0.0
2,070,643	-				-3.1
2,070,643	-				-2.3
2,070,643	-				+0.0
2,070,643	-				-2.9
2,070,643	-				-1.1
2,070,643	-				-1.8
2,070,643	-				-3.1
2,070,643	-				+0.0
2,070,646	+				+0.0
2,070,646	+				+0.0
2,070,647	-				-1.8
2,070,647	-				-2.3
2,070,647	-				-3.1
2,070,647	-				+0.0
2,070,647	-				-2.2
2,070,781	-		Pf1N1B4_1803	0.20	+0.0
2,070,871	-		Pf1N1B4_1803	0.33	+0.0
2,070,871	-		Pf1N1B4_1803	0.33	-1.9
2,070,871	-		Pf1N1B4_1803	0.33	+0.0
2,070,873	+		Pf1N1B4_1803	0.33	+0.0
2,070,873	+		Pf1N1B4_1803	0.33	-1.2
2,070,873	+		Pf1N1B4_1803	0.33	-1.0
2,070,873	+				-1.6
2,070,874	-		Pf1N1B4_1803	0.34	+0.0
2,070,918	+		Pf1N1B4_1803	0.40	+0.0
2,070,919	-		Pf1N1B4_1803	0.40	-3.4
2,070,919	-		Pf1N1B4_1803	0.40	+0.0
2,070,919	-		Pf1N1B4_1803	0.40	+0.0
2,070,969	+		Pf1N1B4_1803	0.47	+0.0
2,070,969	+		Pf1N1B4_1803	0.47	-1.3
2,070,970	-		Pf1N1B4_1803	0.47	+0.0
2,070,984	+		Pf1N1B4_1803	0.49	+0.0
2,070,985	-		Pf1N1B4_1803	0.50	+0.0
2,071,013	+		Pf1N1B4_1803	0.54	+0.0
2,071,200	+		Pf1N1B4_1803	0.81	+0.0
2,071,201	-		Pf1N1B4_1803	0.81	+0.0
2,071,201	-		Pf1N1B4_1803	0.81	-2.6
2,071,201	-		Pf1N1B4_1803	0.81	-0.4
2,071,429	-				+0.0
2,071,436	-				+0.0
2,071,436	-				-2.5
2,071,436	-				+0.0
2,071,441	-				-0.1
2,071,441	-				+0.0
2,071,441	-				+0.0
2,071,508	-				+0.0
2,071,508	-				+0.0
2,071,562	+				+0.0
2,071,563	-				+0.0
2,071,699	+		Pf1N1B4_1804	0.24	-3.8
2,071,754	+		Pf1N1B4_1804	0.32	-2.1
2,071,754	+		Pf1N1B4_1804	0.32	+0.0
2,071,754	+		Pf1N1B4_1804	0.32	-2.1
2,071,755	-		Pf1N1B4_1804	0.32	-3.3
2,071,755	-		Pf1N1B4_1804	0.32	-3.2
2,071,755	-		Pf1N1B4_1804	0.32	+0.0
2,071,818	+		Pf1N1B4_1804	0.41	+0.0
2,071,818	+		Pf1N1B4_1804	0.41	-2.7
2,071,818	+		Pf1N1B4_1804	0.41	+0.0
2,071,818	+		Pf1N1B4_1804	0.41	+0.0
2,071,818	+		Pf1N1B4_1804	0.41	-3.4
2,071,819	-		Pf1N1B4_1804	0.41	-2.9
2,071,819	-		Pf1N1B4_1804	0.41	+0.0
2,071,819	-		Pf1N1B4_1804	0.41	+0.0
2,071,905	+		Pf1N1B4_1804	0.54	+0.0
2,071,905	+		Pf1N1B4_1804	0.54	-3.5
2,071,906	-		Pf1N1B4_1804	0.54	+0.0
2,071,906	-		Pf1N1B4_1804	0.54	+0.0
2,071,906	-		Pf1N1B4_1804	0.54	+0.0
2,071,906	-		Pf1N1B4_1804	0.54	+0.0
2,071,906	-		Pf1N1B4_1804	0.54	+0.0
2,071,906	-		Pf1N1B4_1804	0.54	-3.3
2,071,908	-		Pf1N1B4_1804	0.54	+0.0
2,071,981	-				+0.0
2,071,995	-		Pf1N1B4_1804	0.67	-2.6
2,071,995	-		Pf1N1B4_1804	0.67	-2.2
2,072,199	+				+0.0
2,072,215	+				+0.0
2,072,215	+				+0.0
2,072,215	+				+0.0
2,072,216	-				-2.3
2,072,216	-				+0.0
2,072,216	-				+0.0
2,072,262	+				-1.5
2,072,263	-				+0.0
2,072,263	-				+0.0
2,072,263	-				+0.0
2,072,263	-				+0.0
2,072,263	-				-2.2
2,072,266	+				-2.2
2,072,267	-				-3.2
2,072,267	-				-1.2
2,072,288	+				+0.0
2,072,289	-				+0.0
2,072,289	-				+0.0
2,072,686	+				+0.0
2,072,761	-				-4.2
2,073,189	+		Pf1N1B4_1805	0.35	-1.7
2,073,190	-		Pf1N1B4_1805	0.35	+0.0
2,073,210	+		Pf1N1B4_1805	0.37	-2.0
2,073,210	+		Pf1N1B4_1805	0.37	+0.0
2,073,210	+		Pf1N1B4_1805	0.37	-1.7
2,073,210	+		Pf1N1B4_1805	0.37	+0.0
2,073,210	+		Pf1N1B4_1805	0.37	+0.0
2,073,211	-		Pf1N1B4_1805	0.38	+0.0