Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1077

Experiment: Nitrate reduction, replicate A t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1075 and Pf1N1B4_1076 overlap by 1 nucleotidesPf1N1B4_1076 and Pf1N1B4_1077 are separated by 7 nucleotidesPf1N1B4_1077 and Pf1N1B4_1078 are separated by 43 nucleotidesPf1N1B4_1078 and Pf1N1B4_1079 overlap by 1 nucleotides Pf1N1B4_1075 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 1,208,564 to 1,209,601 _1075 Pf1N1B4_1076 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 1,209,601 to 1,210,125 _1076 Pf1N1B4_1077 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 1,210,133 to 1,210,705 _1077 Pf1N1B4_1078 - LptA, protein essential for LPS transport across the periplasm, at 1,210,749 to 1,211,240 _1078 Pf1N1B4_1079 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 1,211,240 to 1,211,965 _1079 Position (kb) 1210 1211Strain fitness (log2 ratio) -1 0 1at 1210.680 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t2
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1,210,680 + -0.6

Or see this region's nucleotide sequence