Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07920 and PGA1_c07930 overlap by 4 nucleotides PGA1_c07930 and PGA1_c07940 are separated by 129 nucleotides PGA1_c07940 and PGA1_c07950 are separated by 149 nucleotides PGA1_c07950 and PGA1_c07960 are separated by 1 nucleotides
PGA1_c07920: PGA1_c07920 - signal transduction histidine kinase, at 821,849 to 823,264
_c07920
PGA1_c07930: PGA1_c07930 - two-component system response regulator, at 823,261 to 823,926
_c07930
PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033
_c07940
PGA1_c07950: PGA1_c07950 - hypothetical protein, at 825,183 to 825,677
_c07950
PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196
_c07960
Position (kb) 824
825
826 Strain fitness (log2 ratio) -2
-1
0
1 at 823.112 kb on - strand, within PGA1_c07920 at 823.252 kb on - strand at 823.281 kb on + strand at 823.296 kb on + strand at 823.311 kb on + strand at 823.319 kb on - strand at 823.321 kb on + strand at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.329 kb on - strand, within PGA1_c07930 at 823.459 kb on + strand, within PGA1_c07930 at 823.467 kb on - strand, within PGA1_c07930 at 823.467 kb on - strand, within PGA1_c07930 at 823.472 kb on - strand, within PGA1_c07930 at 823.500 kb on + strand, within PGA1_c07930 at 823.500 kb on + strand, within PGA1_c07930 at 823.500 kb on + strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.508 kb on - strand, within PGA1_c07930 at 823.584 kb on - strand, within PGA1_c07930 at 823.646 kb on + strand, within PGA1_c07930 at 823.856 kb on - strand, within PGA1_c07930 at 823.893 kb on + strand at 823.893 kb on + strand at 823.951 kb on + strand at 823.959 kb on - strand at 823.969 kb on - strand at 823.994 kb on + strand at 824.088 kb on + strand at 824.088 kb on - strand at 824.109 kb on + strand at 824.190 kb on + strand, within PGA1_c07940 at 824.231 kb on - strand, within PGA1_c07940 at 824.281 kb on + strand, within PGA1_c07940 at 824.310 kb on + strand, within PGA1_c07940 at 824.350 kb on - strand, within PGA1_c07940 at 824.587 kb on + strand, within PGA1_c07940 at 824.613 kb on - strand, within PGA1_c07940 at 824.674 kb on + strand, within PGA1_c07940 at 824.751 kb on - strand, within PGA1_c07940 at 824.755 kb on + strand, within PGA1_c07940 at 824.760 kb on + strand, within PGA1_c07940 at 824.776 kb on + strand, within PGA1_c07940 at 824.937 kb on + strand at 824.952 kb on - strand at 825.034 kb on + strand at 825.050 kb on - strand at 825.334 kb on - strand, within PGA1_c07950 at 825.397 kb on - strand, within PGA1_c07950 at 825.443 kb on + strand, within PGA1_c07950 at 825.631 kb on + strand at 825.664 kb on + strand at 825.908 kb on + strand, within PGA1_c07960 at 825.916 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 823,112 - PGA1_c07920 0.89 -0.5 823,252 - +0.5 823,281 + +0.0 823,296 + +0.3 823,311 + -0.1 823,319 - -0.7 823,321 + -0.3 823,329 - PGA1_c07930 0.10 -0.0 823,329 - PGA1_c07930 0.10 -2.2 823,329 - PGA1_c07930 0.10 -1.6 823,329 - PGA1_c07930 0.10 +0.9 823,329 - PGA1_c07930 0.10 +0.6 823,329 - PGA1_c07930 0.10 -0.4 823,329 - PGA1_c07930 0.10 -0.9 823,329 - PGA1_c07930 0.10 -0.5 823,459 + PGA1_c07930 0.30 -0.5 823,467 - PGA1_c07930 0.31 -1.6 823,467 - PGA1_c07930 0.31 -1.6 823,472 - PGA1_c07930 0.32 -0.2 823,500 + PGA1_c07930 0.36 -0.7 823,500 + PGA1_c07930 0.36 -0.5 823,500 + PGA1_c07930 0.36 +1.2 823,508 - PGA1_c07930 0.37 +0.6 823,508 - PGA1_c07930 0.37 +1.1 823,508 - PGA1_c07930 0.37 +0.5 823,508 - PGA1_c07930 0.37 +0.1 823,584 - PGA1_c07930 0.48 +0.2 823,646 + PGA1_c07930 0.58 +0.5 823,856 - PGA1_c07930 0.89 +0.7 823,893 + +1.0 823,893 + +1.1 823,951 + -0.0 823,959 - -1.1 823,969 - -0.5 823,994 + -0.2 824,088 + +0.7 824,088 - +0.5 824,109 + -0.2 824,190 + PGA1_c07940 0.14 -0.5 824,231 - PGA1_c07940 0.18 -1.6 824,281 + PGA1_c07940 0.23 +0.0 824,310 + PGA1_c07940 0.26 -0.0 824,350 - PGA1_c07940 0.30 +0.4 824,587 + PGA1_c07940 0.54 -1.9 824,613 - PGA1_c07940 0.57 -0.2 824,674 + PGA1_c07940 0.63 +0.3 824,751 - PGA1_c07940 0.71 -0.8 824,755 + PGA1_c07940 0.71 +1.0 824,760 + PGA1_c07940 0.72 -0.5 824,776 + PGA1_c07940 0.74 -0.9 824,937 + -0.9 824,952 - +0.1 825,034 + +0.4 825,050 - +0.3 825,334 - PGA1_c07950 0.31 +0.6 825,397 - PGA1_c07950 0.43 -0.1 825,443 + PGA1_c07950 0.53 +0.7 825,631 + -0.4 825,664 + -0.1 825,908 + PGA1_c07960 0.15 -0.5 825,916 - PGA1_c07960 0.16 +1.0 825,992 - PGA1_c07960 0.21 +0.7 825,992 - PGA1_c07960 0.21 +0.5
Or see this region's nucleotide sequence