Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01030 and PGA1_262p01040 are separated by 151 nucleotides PGA1_262p01040 and PGA1_262p01050 are separated by 528 nucleotides
PGA1_262p01030: PGA1_262p01030 - dipeptide transport system permease protein DppB, at 112,606 to 113,586
_262p01030
PGA1_262p01040: PGA1_262p01040 - periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP), at 113,738 to 115,294
_262p01040
PGA1_262p01050: PGA1_262p01050 - Hemolysin-type calcium-binding repeat (2 copies)., at 115,823 to 116,746
_262p01050
Position (kb)
113
114
115
116 Strain fitness (log2 ratio)
-1
0
1
2 at 112.802 kb on + strand, within PGA1_262p01030 at 112.802 kb on + strand, within PGA1_262p01030 at 113.099 kb on - strand, within PGA1_262p01030 at 113.297 kb on - strand, within PGA1_262p01030 at 113.511 kb on - strand at 113.654 kb on + strand at 113.715 kb on - strand at 113.771 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.827 kb on + strand at 113.827 kb on + strand at 113.875 kb on + strand at 113.956 kb on + strand, within PGA1_262p01040 at 113.981 kb on - strand, within PGA1_262p01040 at 114.009 kb on - strand, within PGA1_262p01040 at 114.099 kb on - strand, within PGA1_262p01040 at 114.125 kb on + strand, within PGA1_262p01040 at 114.643 kb on + strand, within PGA1_262p01040 at 114.791 kb on + strand, within PGA1_262p01040 at 114.906 kb on + strand, within PGA1_262p01040 at 114.951 kb on - strand, within PGA1_262p01040 at 115.033 kb on + strand, within PGA1_262p01040 at 115.033 kb on - strand, within PGA1_262p01040 at 115.158 kb on + strand at 115.166 kb on - strand at 115.166 kb on - strand at 115.352 kb on + strand at 115.477 kb on - strand at 115.524 kb on - strand at 115.637 kb on + strand at 115.722 kb on - strand at 115.846 kb on + strand at 115.846 kb on + strand at 115.854 kb on - strand at 115.857 kb on + strand at 115.912 kb on + strand at 115.938 kb on + strand, within PGA1_262p01050 at 115.946 kb on - strand, within PGA1_262p01050 at 115.948 kb on + strand, within PGA1_262p01050 at 115.956 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.114 kb on - strand, within PGA1_262p01050 at 116.137 kb on - strand, within PGA1_262p01050 at 116.191 kb on - strand, within PGA1_262p01050 at 116.250 kb on - strand, within PGA1_262p01050
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 112,802 + PGA1_262p01030 0.20 -0.1 112,802 + PGA1_262p01030 0.20 -0.1 113,099 - PGA1_262p01030 0.50 -1.0 113,297 - PGA1_262p01030 0.70 +0.0 113,511 - +0.2 113,654 + +0.2 113,715 - -0.6 113,771 + +0.2 113,817 + +0.7 113,817 + +0.5 113,817 + -0.2 113,817 + +0.4 113,827 + +0.6 113,827 + -0.6 113,875 + +0.8 113,956 + PGA1_262p01040 0.14 +0.7 113,981 - PGA1_262p01040 0.16 -1.6 114,009 - PGA1_262p01040 0.17 -0.8 114,099 - PGA1_262p01040 0.23 +0.6 114,125 + PGA1_262p01040 0.25 +1.0 114,643 + PGA1_262p01040 0.58 +0.6 114,791 + PGA1_262p01040 0.68 +1.8 114,906 + PGA1_262p01040 0.75 -0.3 114,951 - PGA1_262p01040 0.78 +1.6 115,033 + PGA1_262p01040 0.83 +0.3 115,033 - PGA1_262p01040 0.83 +2.0 115,158 + -0.5 115,166 - +0.6 115,166 - +0.3 115,352 + -0.4 115,477 - -0.2 115,524 - -0.5 115,637 + +0.4 115,722 - +0.2 115,846 + -0.3 115,846 + -1.2 115,854 - +0.4 115,857 + -1.3 115,912 + +0.1 115,938 + PGA1_262p01050 0.12 +0.3 115,946 - PGA1_262p01050 0.13 +0.1 115,948 + PGA1_262p01050 0.14 +0.5 115,956 - PGA1_262p01050 0.14 +1.2 116,090 - PGA1_262p01050 0.29 +0.3 116,090 - PGA1_262p01050 0.29 +1.3 116,114 - PGA1_262p01050 0.31 -0.6 116,137 - PGA1_262p01050 0.34 -0.6 116,191 - PGA1_262p01050 0.40 +0.7 116,250 - PGA1_262p01050 0.46 +0.2
Or see this region's nucleotide sequence