Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1526

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1525 and DVU1526 are separated by 363 nucleotidesDVU1526 and DVU1527 overlap by 4 nucleotides DVU1525: DVU1525 - conserved domain protein (TIGR), at 1,593,138 to 1,594,130 DVU1525 DVU1526: DVU1526 - hypothetical protein (TIGR), at 1,594,494 to 1,594,712 DVU1526 DVU1527: DVU1527 - site-specific recombinase, phage integrase family (TIGR), at 1,594,709 to 1,595,902 DVU1527 Position (kb) 1594 1595Strain fitness (log2 ratio) -3 -2 -1 0 1at 1593.551 kb on + strand, within DVU1525at 1593.624 kb on + strand, within DVU1525at 1593.624 kb on + strand, within DVU1525at 1593.712 kb on + strand, within DVU1525at 1593.712 kb on - strand, within DVU1525at 1593.725 kb on - strand, within DVU1525at 1593.766 kb on + strand, within DVU1525at 1593.854 kb on + strand, within DVU1525at 1593.905 kb on + strand, within DVU1525at 1593.907 kb on + strand, within DVU1525at 1593.934 kb on - strand, within DVU1525at 1593.945 kb on + strand, within DVU1525at 1593.955 kb on + strand, within DVU1525at 1593.971 kb on + strand, within DVU1525at 1593.972 kb on + strand, within DVU1525at 1593.991 kb on + strand, within DVU1525at 1594.055 kb on + strandat 1594.136 kb on + strandat 1594.139 kb on + strandat 1594.183 kb on + strandat 1594.191 kb on - strandat 1594.225 kb on - strandat 1594.234 kb on + strandat 1594.242 kb on - strandat 1594.242 kb on - strandat 1594.312 kb on - strandat 1594.313 kb on + strandat 1594.392 kb on + strandat 1594.416 kb on + strandat 1594.417 kb on - strandat 1594.446 kb on - strandat 1594.446 kb on - strandat 1594.568 kb on + strand, within DVU1526at 1594.580 kb on - strand, within DVU1526at 1594.586 kb on - strand, within DVU1526at 1594.586 kb on - strand, within DVU1526at 1594.666 kb on - strand, within DVU1526at 1594.668 kb on - strand, within DVU1526at 1594.707 kb on - strandat 1594.720 kb on - strandat 1594.760 kb on - strandat 1594.780 kb on + strandat 1594.824 kb on + strandat 1594.832 kb on - strand, within DVU1527at 1595.014 kb on + strand, within DVU1527at 1595.014 kb on + strand, within DVU1527at 1595.054 kb on + strand, within DVU1527at 1595.072 kb on - strand, within DVU1527at 1595.093 kb on - strand, within DVU1527at 1595.130 kb on + strand, within DVU1527at 1595.206 kb on - strand, within DVU1527at 1595.233 kb on - strand, within DVU1527at 1595.272 kb on - strand, within DVU1527at 1595.403 kb on - strand, within DVU1527at 1595.403 kb on - strand, within DVU1527at 1595.531 kb on - strand, within DVU1527at 1595.587 kb on + strand, within DVU1527

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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1,593,551 + DVU1525 0.42 -0.6
1,593,624 + DVU1525 0.49 -0.5
1,593,624 + DVU1525 0.49 +0.4
1,593,712 + DVU1525 0.58 -0.1
1,593,712 - DVU1525 0.58 -0.0
1,593,725 - DVU1525 0.59 -0.2
1,593,766 + DVU1525 0.63 +0.1
1,593,854 + DVU1525 0.72 +0.2
1,593,905 + DVU1525 0.77 +0.7
1,593,907 + DVU1525 0.77 -0.0
1,593,934 - DVU1525 0.80 -0.1
1,593,945 + DVU1525 0.81 +0.6
1,593,955 + DVU1525 0.82 +0.4
1,593,971 + DVU1525 0.84 -1.4
1,593,972 + DVU1525 0.84 +0.3
1,593,991 + DVU1525 0.86 -1.0
1,594,055 + +0.2
1,594,136 + +0.0
1,594,139 + -0.0
1,594,183 + -0.2
1,594,191 - +0.1
1,594,225 - +0.2
1,594,234 + -0.2
1,594,242 - +0.2
1,594,242 - +0.2
1,594,312 - -0.8
1,594,313 + +0.5
1,594,392 + -3.6
1,594,416 + -1.6
1,594,417 - -1.1
1,594,446 - -0.0
1,594,446 - +0.3
1,594,568 + DVU1526 0.34 -0.8
1,594,580 - DVU1526 0.39 -1.5
1,594,586 - DVU1526 0.42 -0.1
1,594,586 - DVU1526 0.42 +0.1
1,594,666 - DVU1526 0.79 -2.5
1,594,668 - DVU1526 0.79 -1.3
1,594,707 - +0.1
1,594,720 - -0.1
1,594,760 - +0.1
1,594,780 + -1.7
1,594,824 + -1.7
1,594,832 - DVU1527 0.10 -0.4
1,595,014 + DVU1527 0.26 +0.2
1,595,014 + DVU1527 0.26 +0.2
1,595,054 + DVU1527 0.29 +0.8
1,595,072 - DVU1527 0.30 +0.2
1,595,093 - DVU1527 0.32 +0.4
1,595,130 + DVU1527 0.35 -1.0
1,595,206 - DVU1527 0.42 +0.2
1,595,233 - DVU1527 0.44 -1.5
1,595,272 - DVU1527 0.47 -0.1
1,595,403 - DVU1527 0.58 +0.4
1,595,403 - DVU1527 0.58 -0.4
1,595,531 - DVU1527 0.69 +0.1
1,595,587 + DVU1527 0.74 -0.6

Or see this region's nucleotide sequence