Experiment: BHIS with Doxycycline hyclate 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0387 and BT0388 are separated by 24 nucleotides BT0388 and BT0389 are separated by 4 nucleotides BT0389 and BT0390 are separated by 4 nucleotides
BT0387: BT0387 - NADH dehydrogenase subunit 2 (NCBI ptt file), at 476,462 to 477,778
BT0387
BT0388: BT0388 - galactoside O-acetyltransferase (NCBI ptt file), at 477,803 to 478,426
BT0388
BT0389: BT0389 - putative galactoside acetyltransferase (NCBI ptt file), at 478,431 to 478,976
BT0389
BT0390: BT0390 - putative O-antigen export protein (NCBI ptt file), at 478,981 to 480,345
BT0390
Position (kb) 478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.444 kb on + strand, within BT0387 at 477.504 kb on + strand, within BT0387 at 477.610 kb on - strand, within BT0387 at 477.610 kb on - strand, within BT0387 at 477.650 kb on - strand at 477.712 kb on + strand at 477.712 kb on + strand at 477.736 kb on - strand at 477.777 kb on - strand at 477.849 kb on - strand at 477.865 kb on - strand at 477.955 kb on + strand, within BT0388 at 478.022 kb on - strand, within BT0388 at 478.078 kb on + strand, within BT0388 at 478.123 kb on - strand, within BT0388 at 478.135 kb on + strand, within BT0388 at 478.136 kb on - strand, within BT0388 at 478.280 kb on - strand, within BT0388 at 478.352 kb on - strand, within BT0388 at 478.354 kb on - strand, within BT0388 at 478.378 kb on + strand at 478.393 kb on - strand at 478.435 kb on + strand at 478.593 kb on - strand, within BT0389 at 478.672 kb on + strand, within BT0389 at 478.673 kb on - strand, within BT0389 at 478.730 kb on + strand, within BT0389 at 478.920 kb on - strand, within BT0389 at 479.103 kb on + strand at 479.103 kb on + strand at 479.196 kb on + strand, within BT0390 at 479.305 kb on - strand, within BT0390 at 479.378 kb on + strand, within BT0390 at 479.489 kb on + strand, within BT0390 at 479.490 kb on - strand, within BT0390 at 479.556 kb on + strand, within BT0390 at 479.591 kb on - strand, within BT0390 at 479.591 kb on - strand, within BT0390 at 479.602 kb on - strand, within BT0390 at 479.649 kb on - strand, within BT0390 at 479.671 kb on - strand, within BT0390 at 479.753 kb on + strand, within BT0390 at 479.815 kb on - strand, within BT0390 at 479.889 kb on - strand, within BT0390
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Doxycycline hyclate 0.0001953125 mM remove 477,444 + BT0387 0.75 -0.1 477,504 + BT0387 0.79 -1.5 477,610 - BT0387 0.87 -1.5 477,610 - BT0387 0.87 +0.5 477,650 - -1.1 477,712 + -2.5 477,712 + +0.5 477,736 - -0.5 477,777 - -1.1 477,849 - -3.3 477,865 - -0.7 477,955 + BT0388 0.24 -0.5 478,022 - BT0388 0.35 -1.5 478,078 + BT0388 0.44 -0.5 478,123 - BT0388 0.51 +1.0 478,135 + BT0388 0.53 -2.5 478,136 - BT0388 0.53 -0.5 478,280 - BT0388 0.76 -0.5 478,352 - BT0388 0.88 -0.5 478,354 - BT0388 0.88 -2.8 478,378 + -2.3 478,393 - -1.1 478,435 + +1.4 478,593 - BT0389 0.30 -1.8 478,672 + BT0389 0.44 -2.1 478,673 - BT0389 0.44 -2.5 478,730 + BT0389 0.55 -3.2 478,920 - BT0389 0.90 -0.5 479,103 + -3.7 479,103 + +1.1 479,196 + BT0390 0.16 +0.5 479,305 - BT0390 0.24 +0.5 479,378 + BT0390 0.29 +2.1 479,489 + BT0390 0.37 -1.1 479,490 - BT0390 0.37 +0.5 479,556 + BT0390 0.42 -2.8 479,591 - BT0390 0.45 +0.5 479,591 - BT0390 0.45 +0.5 479,602 - BT0390 0.45 -0.7 479,649 - BT0390 0.49 +1.5 479,671 - BT0390 0.51 -1.8 479,753 + BT0390 0.57 +0.9 479,815 - BT0390 0.61 -1.1 479,889 - BT0390 0.67 -1.8
Or see this region's nucleotide sequence