Experiment: BHIS with Doxycycline hyclate 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0236 and BT0237 are separated by 108 nucleotides BT0237 and BT0238 are separated by 103 nucleotides
BT0236: BT0236 - conserved hypothetical protein (NCBI ptt file), at 257,778 to 259,826
BT0236
BT0237: BT0237 - conserved hypothetical protein (NCBI ptt file), at 259,935 to 262,022
BT0237
BT0238: BT0238 - transcriptional regulator (NCBI ptt file), at 262,126 to 263,370
BT0238
Position (kb) 259
260
261
262
263 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 258.959 kb on + strand, within BT0236 at 258.960 kb on - strand, within BT0236 at 258.960 kb on - strand, within BT0236 at 259.033 kb on - strand, within BT0236 at 259.047 kb on - strand, within BT0236 at 259.056 kb on - strand, within BT0236 at 259.064 kb on + strand, within BT0236 at 259.238 kb on - strand, within BT0236 at 259.313 kb on + strand, within BT0236 at 259.400 kb on + strand, within BT0236 at 259.433 kb on + strand, within BT0236 at 259.475 kb on - strand, within BT0236 at 259.489 kb on + strand, within BT0236 at 259.546 kb on - strand, within BT0236 at 259.655 kb on + strand at 259.656 kb on - strand at 259.786 kb on + strand at 259.869 kb on - strand at 259.918 kb on - strand at 259.918 kb on - strand at 260.025 kb on - strand at 260.054 kb on + strand at 260.054 kb on + strand at 260.181 kb on - strand, within BT0237 at 260.193 kb on + strand, within BT0237 at 260.194 kb on - strand, within BT0237 at 260.201 kb on - strand, within BT0237 at 260.225 kb on + strand, within BT0237 at 260.288 kb on + strand, within BT0237 at 260.312 kb on + strand, within BT0237 at 260.356 kb on + strand, within BT0237 at 260.356 kb on + strand, within BT0237 at 260.550 kb on + strand, within BT0237 at 260.611 kb on + strand, within BT0237 at 260.611 kb on + strand, within BT0237 at 260.611 kb on + strand, within BT0237 at 260.615 kb on + strand, within BT0237 at 260.669 kb on - strand, within BT0237 at 260.755 kb on + strand, within BT0237 at 260.828 kb on + strand, within BT0237 at 260.829 kb on - strand, within BT0237 at 260.917 kb on + strand, within BT0237 at 261.042 kb on + strand, within BT0237 at 261.091 kb on + strand, within BT0237 at 261.096 kb on - strand, within BT0237 at 261.109 kb on + strand, within BT0237 at 261.228 kb on + strand, within BT0237 at 261.392 kb on - strand, within BT0237 at 261.396 kb on - strand, within BT0237 at 261.492 kb on - strand, within BT0237 at 261.518 kb on - strand, within BT0237 at 261.526 kb on + strand, within BT0237 at 261.527 kb on - strand, within BT0237 at 261.579 kb on - strand, within BT0237 at 261.602 kb on - strand, within BT0237 at 261.696 kb on + strand, within BT0237 at 261.699 kb on - strand, within BT0237 at 261.708 kb on - strand, within BT0237 at 261.798 kb on + strand, within BT0237 at 261.881 kb on + strand at 261.882 kb on - strand at 261.980 kb on + strand at 261.981 kb on - strand at 261.985 kb on - strand at 262.047 kb on + strand at 262.095 kb on + strand at 262.130 kb on + strand at 262.195 kb on + strand at 262.218 kb on + strand at 262.247 kb on + strand at 262.410 kb on + strand, within BT0238 at 262.410 kb on + strand, within BT0238 at 262.444 kb on - strand, within BT0238 at 262.444 kb on - strand, within BT0238 at 262.455 kb on + strand, within BT0238 at 262.487 kb on + strand, within BT0238 at 262.489 kb on + strand, within BT0238 at 262.489 kb on + strand, within BT0238 at 262.542 kb on + strand, within BT0238 at 262.543 kb on - strand, within BT0238 at 262.598 kb on - strand, within BT0238 at 262.704 kb on + strand, within BT0238 at 262.782 kb on - strand, within BT0238 at 262.857 kb on + strand, within BT0238 at 262.870 kb on + strand, within BT0238
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Doxycycline hyclate 0.0001953125 mM remove 258,959 + BT0236 0.58 +0.4 258,960 - BT0236 0.58 -2.7 258,960 - BT0236 0.58 -1.2 259,033 - BT0236 0.61 -0.6 259,047 - BT0236 0.62 -2.2 259,056 - BT0236 0.62 +0.4 259,064 + BT0236 0.63 +0.9 259,238 - BT0236 0.71 -1.9 259,313 + BT0236 0.75 -3.1 259,400 + BT0236 0.79 -1.6 259,433 + BT0236 0.81 -3.0 259,475 - BT0236 0.83 +0.4 259,489 + BT0236 0.84 +2.7 259,546 - BT0236 0.86 +0.4 259,655 + -1.9 259,656 - -1.6 259,786 + +0.2 259,869 - -4.2 259,918 - -1.2 259,918 - -2.2 260,025 - +0.4 260,054 + +0.4 260,054 + +0.4 260,181 - BT0237 0.12 -1.9 260,193 + BT0237 0.12 +0.4 260,194 - BT0237 0.12 -1.2 260,201 - BT0237 0.13 -3.7 260,225 + BT0237 0.14 +1.8 260,288 + BT0237 0.17 -1.2 260,312 + BT0237 0.18 +0.4 260,356 + BT0237 0.20 -2.2 260,356 + BT0237 0.20 -0.6 260,550 + BT0237 0.29 +0.0 260,611 + BT0237 0.32 +0.0 260,611 + BT0237 0.32 -3.4 260,611 + BT0237 0.32 -1.6 260,615 + BT0237 0.33 -1.2 260,669 - BT0237 0.35 -0.6 260,755 + BT0237 0.39 -1.2 260,828 + BT0237 0.43 -0.6 260,829 - BT0237 0.43 +0.4 260,917 + BT0237 0.47 +0.4 261,042 + BT0237 0.53 -1.9 261,091 + BT0237 0.55 -1.6 261,096 - BT0237 0.56 -0.2 261,109 + BT0237 0.56 +1.4 261,228 + BT0237 0.62 +0.9 261,392 - BT0237 0.70 -0.6 261,396 - BT0237 0.70 -1.6 261,492 - BT0237 0.75 +0.2 261,518 - BT0237 0.76 -2.7 261,526 + BT0237 0.76 -0.6 261,527 - BT0237 0.76 -0.6 261,579 - BT0237 0.79 -1.2 261,602 - BT0237 0.80 +0.1 261,696 + BT0237 0.84 -1.6 261,699 - BT0237 0.84 -2.4 261,708 - BT0237 0.85 -3.0 261,798 + BT0237 0.89 +3.2 261,881 + -1.2 261,882 - -2.7 261,980 + -2.9 261,981 - +2.2 261,985 - -2.9 262,047 + -3.2 262,095 + -0.3 262,130 + -2.4 262,195 + -2.2 262,218 + -0.6 262,247 + -2.4 262,410 + BT0238 0.23 -1.2 262,410 + BT0238 0.23 +0.4 262,444 - BT0238 0.26 -4.1 262,444 - BT0238 0.26 +0.4 262,455 + BT0238 0.26 +0.4 262,487 + BT0238 0.29 -3.2 262,489 + BT0238 0.29 -2.9 262,489 + BT0238 0.29 -1.2 262,542 + BT0238 0.33 +0.4 262,543 - BT0238 0.33 -0.6 262,598 - BT0238 0.38 -4.0 262,704 + BT0238 0.46 -2.7 262,782 - BT0238 0.53 -1.2 262,857 + BT0238 0.59 -0.6 262,870 + BT0238 0.60 +0.4
Or see this region's nucleotide sequence