Experiment: BHIS with Doxycycline hyclate 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0173 and BT0174 are separated by 19 nucleotides BT0174 and BT0175 are separated by 238 nucleotides BT0175 and BT0176 are separated by 772 nucleotides
BT0173: BT0173 - conserved hypothetical protein (NCBI ptt file), at 181,926 to 182,936
BT0173
BT0174: BT0174 - conserved hypothetical protein (NCBI ptt file), at 182,956 to 183,657
BT0174
BT0175: BT0175 - conserved hypothetical protein (NCBI ptt file), at 183,896 to 184,300
BT0175
BT0176: BT0176 - conserved hypothetical protein (NCBI ptt file), at 185,073 to 185,561
BT0176
Position (kb) 183
184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 182.936 kb on + strand at 182.953 kb on - strand at 182.953 kb on - strand at 183.014 kb on + strand at 183.195 kb on - strand, within BT0174 at 183.226 kb on - strand, within BT0174 at 183.402 kb on + strand, within BT0174 at 183.471 kb on + strand, within BT0174 at 183.651 kb on - strand at 183.693 kb on - strand at 183.982 kb on - strand, within BT0175 at 184.181 kb on + strand, within BT0175 at 184.181 kb on + strand, within BT0175 at 184.254 kb on + strand, within BT0175 at 184.259 kb on + strand, within BT0175 at 184.266 kb on + strand at 184.291 kb on - strand at 184.302 kb on + strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.417 kb on + strand at 184.424 kb on + strand at 184.426 kb on + strand at 184.426 kb on + strand at 184.427 kb on - strand at 184.606 kb on - strand at 184.612 kb on + strand at 184.617 kb on + strand at 184.618 kb on - strand at 184.661 kb on + strand at 184.712 kb on - strand at 184.792 kb on - strand at 184.792 kb on - strand at 184.792 kb on - strand at 184.811 kb on - strand at 184.815 kb on + strand at 184.832 kb on + strand at 184.884 kb on - strand at 185.006 kb on - strand at 185.006 kb on - strand at 185.010 kb on - strand at 185.013 kb on + strand at 185.013 kb on + strand at 185.016 kb on - strand at 185.030 kb on - strand at 185.048 kb on - strand at 185.050 kb on - strand at 185.061 kb on - strand at 185.121 kb on - strand at 185.138 kb on + strand, within BT0176 at 185.138 kb on + strand, within BT0176 at 185.139 kb on - strand, within BT0176 at 185.142 kb on + strand, within BT0176 at 185.153 kb on - strand, within BT0176 at 185.220 kb on + strand, within BT0176 at 185.242 kb on + strand, within BT0176 at 185.243 kb on - strand, within BT0176 at 185.290 kb on - strand, within BT0176 at 185.291 kb on + strand, within BT0176 at 185.291 kb on + strand, within BT0176 at 185.292 kb on - strand, within BT0176 at 185.292 kb on - strand, within BT0176 at 185.292 kb on - strand, within BT0176 at 185.292 kb on - strand, within BT0176 at 185.292 kb on - strand, within BT0176
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Doxycycline hyclate 0.0001953125 mM remove 182,936 + -1.9 182,953 - -0.5 182,953 - -3.1 183,014 + +0.5 183,195 - BT0174 0.34 -0.5 183,226 - BT0174 0.38 -0.5 183,402 + BT0174 0.64 +0.5 183,471 + BT0174 0.73 +0.5 183,651 - +0.5 183,693 - +0.5 183,982 - BT0175 0.21 -1.1 184,181 + BT0175 0.70 -0.5 184,181 + BT0175 0.70 +1.2 184,254 + BT0175 0.88 -1.5 184,259 + BT0175 0.90 +2.0 184,266 + -2.7 184,291 - -1.9 184,302 + -1.4 184,416 - -1.5 184,416 - -2.4 184,417 + -0.5 184,424 + -1.9 184,426 + -0.5 184,426 + -0.5 184,427 - -2.4 184,606 - +0.5 184,612 + +0.5 184,617 + -0.5 184,618 - -2.5 184,661 + -0.5 184,712 - -2.1 184,792 - +0.5 184,792 - +0.6 184,792 - +0.5 184,811 - -0.5 184,815 + -2.4 184,832 + -1.9 184,884 - +0.5 185,006 - -2.7 185,006 - -2.4 185,010 - -3.9 185,013 + -2.7 185,013 + +1.6 185,016 - -0.8 185,030 - -0.6 185,048 - -0.8 185,050 - -0.0 185,061 - -0.6 185,121 - +0.5 185,138 + BT0176 0.13 -0.8 185,138 + BT0176 0.13 -0.2 185,139 - BT0176 0.13 -0.3 185,142 + BT0176 0.14 -0.0 185,153 - BT0176 0.16 -0.3 185,220 + BT0176 0.30 -1.1 185,242 + BT0176 0.35 +1.2 185,243 - BT0176 0.35 -1.0 185,290 - BT0176 0.44 -1.2 185,291 + BT0176 0.45 +0.3 185,291 + BT0176 0.45 -0.5 185,292 - BT0176 0.45 +0.4 185,292 - BT0176 0.45 -0.2 185,292 - BT0176 0.45 +0.1 185,292 - BT0176 0.45 -2.4 185,292 - BT0176 0.45 -2.4
Or see this region's nucleotide sequence