Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1985

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1983 and msrA are separated by 127 nucleotidesmsrA and DVU1985 are separated by 109 nucleotidesDVU1985 and DVU1986 are separated by 400 nucleotides DVU1983: DVU1983 - hypothetical protein (TIGR), at 2,060,785 to 2,062,008 DVU1983 DVU1984: msrA - peptide methionine sulfoxide reductase MsrA (TIGR), at 2,062,136 to 2,062,762 msrA DVU1985: DVU1985 - conserved domain protein (TIGR), at 2,062,872 to 2,064,128 DVU1985 DVU1986: DVU1986 - conserved hypothetical protein (TIGR), at 2,064,529 to 2,064,960 DVU1986 Position (kb) 2062 2063 2064 2065Strain fitness (log2 ratio) -3 -2 -1 0 1at 2061.955 kb on + strandat 2061.995 kb on - strandat 2062.008 kb on + strandat 2062.081 kb on - strandat 2062.175 kb on - strandat 2062.325 kb on + strand, within msrAat 2062.423 kb on - strand, within msrAat 2062.583 kb on - strand, within msrAat 2062.592 kb on - strand, within msrAat 2062.639 kb on + strand, within msrAat 2062.661 kb on + strand, within msrAat 2062.666 kb on + strand, within msrAat 2062.742 kb on + strandat 2062.752 kb on + strandat 2062.752 kb on + strandat 2062.908 kb on + strandat 2062.928 kb on + strandat 2062.965 kb on + strandat 2063.014 kb on - strand, within DVU1985at 2063.075 kb on - strand, within DVU1985at 2063.379 kb on - strand, within DVU1985at 2063.794 kb on - strand, within DVU1985at 2063.897 kb on + strand, within DVU1985at 2064.006 kb on - strandat 2064.094 kb on + strandat 2064.102 kb on - strandat 2064.165 kb on - strandat 2064.169 kb on + strandat 2064.177 kb on - strandat 2064.254 kb on - strandat 2064.269 kb on + strandat 2064.269 kb on + strandat 2064.277 kb on - strandat 2064.277 kb on - strandat 2064.289 kb on - strandat 2064.311 kb on - strandat 2064.455 kb on - strandat 2064.493 kb on + strandat 2064.493 kb on + strandat 2064.493 kb on + strandat 2064.493 kb on + strandat 2064.501 kb on - strandat 2064.501 kb on - strandat 2064.523 kb on - strandat 2064.593 kb on + strand, within DVU1986at 2064.765 kb on + strand, within DVU1986at 2064.786 kb on + strand, within DVU1986at 2064.826 kb on + strand, within DVU1986at 2064.834 kb on - strand, within DVU1986at 2064.861 kb on - strand, within DVU1986at 2064.894 kb on + strand, within DVU1986at 2064.916 kb on - strand, within DVU1986at 2065.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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2,061,955 + +0.6
2,061,995 - +0.1
2,062,008 + -0.5
2,062,081 - -1.5
2,062,175 - -0.1
2,062,325 + msrA DVU1984 0.30 -1.3
2,062,423 - msrA DVU1984 0.46 +0.4
2,062,583 - msrA DVU1984 0.71 +0.1
2,062,592 - msrA DVU1984 0.73 -0.4
2,062,639 + msrA DVU1984 0.80 +0.5
2,062,661 + msrA DVU1984 0.84 -0.1
2,062,666 + msrA DVU1984 0.85 +0.1
2,062,742 + -0.5
2,062,752 + +0.7
2,062,752 + +1.1
2,062,908 + -1.2
2,062,928 + -0.8
2,062,965 + -2.7
2,063,014 - DVU1985 0.11 -2.2
2,063,075 - DVU1985 0.16 -2.3
2,063,379 - DVU1985 0.40 -1.5
2,063,794 - DVU1985 0.73 -0.9
2,063,897 + DVU1985 0.82 -2.0
2,064,006 - -1.6
2,064,094 + -2.1
2,064,102 - +0.9
2,064,165 - -0.8
2,064,169 + +0.7
2,064,177 - +0.1
2,064,254 - -1.0
2,064,269 + -1.4
2,064,269 + +0.0
2,064,277 - +0.3
2,064,277 - +0.1
2,064,289 - -2.2
2,064,311 - -2.8
2,064,455 - +0.4
2,064,493 + -0.7
2,064,493 + -1.6
2,064,493 + +0.4
2,064,493 + -0.0
2,064,501 - +0.5
2,064,501 - +0.2
2,064,523 - -0.1
2,064,593 + DVU1986 0.15 +0.4
2,064,765 + DVU1986 0.55 +0.2
2,064,786 + DVU1986 0.59 +0.6
2,064,826 + DVU1986 0.69 -2.3
2,064,834 - DVU1986 0.71 +0.2
2,064,861 - DVU1986 0.77 +0.6
2,064,894 + DVU1986 0.84 +0.1
2,064,916 - DVU1986 0.90 +0.2
2,065,106 + -1.0

Or see this region's nucleotide sequence