Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0953

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0952 and tyrS are separated by 193 nucleotidestyrS and DVU0954 are separated by 172 nucleotides DVU0952: DVU0952 - conserved hypothetical protein TIGR00282 (TIGR), at 1,045,296 to 1,046,168 DVU0952 DVU0953: tyrS - tyrosyl-tRNA synthetase (TIGR), at 1,046,362 to 1,047,558 tyrS DVU0954: DVU0954 - organic solvent tolerance protein, putative (TIGR), at 1,047,731 to 1,050,025 DVU0954 Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -3 -2 -1 0 1at 1045.479 kb on + strand, within DVU0952at 1045.479 kb on + strand, within DVU0952at 1045.600 kb on - strand, within DVU0952at 1045.629 kb on - strand, within DVU0952at 1045.718 kb on + strand, within DVU0952at 1045.726 kb on - strand, within DVU0952at 1045.752 kb on + strand, within DVU0952at 1045.781 kb on - strand, within DVU0952at 1045.781 kb on - strand, within DVU0952at 1045.807 kb on - strand, within DVU0952at 1045.856 kb on - strand, within DVU0952at 1045.925 kb on + strand, within DVU0952at 1045.925 kb on + strand, within DVU0952at 1045.935 kb on + strand, within DVU0952at 1045.970 kb on + strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1046.072 kb on + strand, within DVU0952at 1046.072 kb on + strand, within DVU0952at 1046.074 kb on + strand, within DVU0952at 1046.074 kb on + strand, within DVU0952at 1046.149 kb on + strandat 1046.169 kb on - strandat 1046.169 kb on - strandat 1046.188 kb on + strandat 1046.217 kb on + strandat 1046.220 kb on - strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.273 kb on - strandat 1046.321 kb on + strandat 1046.329 kb on - strandat 1047.565 kb on - strandat 1047.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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1,045,479 + DVU0952 0.21 -0.0
1,045,479 + DVU0952 0.21 -1.1
1,045,600 - DVU0952 0.35 +0.2
1,045,629 - DVU0952 0.38 -0.3
1,045,718 + DVU0952 0.48 -0.7
1,045,726 - DVU0952 0.49 +0.4
1,045,752 + DVU0952 0.52 -0.4
1,045,781 - DVU0952 0.56 -1.3
1,045,781 - DVU0952 0.56 +0.3
1,045,807 - DVU0952 0.59 -2.1
1,045,856 - DVU0952 0.64 -1.9
1,045,925 + DVU0952 0.72 -2.1
1,045,925 + DVU0952 0.72 -0.3
1,045,935 + DVU0952 0.73 +0.2
1,045,970 + DVU0952 0.77 -0.2
1,045,978 - DVU0952 0.78 +0.0
1,045,978 - DVU0952 0.78 +0.0
1,045,978 - DVU0952 0.78 +0.1
1,045,978 - DVU0952 0.78 +0.1
1,046,072 + DVU0952 0.89 -1.8
1,046,072 + DVU0952 0.89 +0.1
1,046,074 + DVU0952 0.89 -0.6
1,046,074 + DVU0952 0.89 -0.5
1,046,149 + -3.1
1,046,169 - +0.2
1,046,169 - -0.1
1,046,188 + -0.7
1,046,217 + -0.5
1,046,220 - -1.3
1,046,222 + +0.4
1,046,222 + -1.0
1,046,222 + -2.3
1,046,222 + -0.8
1,046,230 - -0.5
1,046,230 - -1.1
1,046,230 - -1.1
1,046,230 - +0.4
1,046,273 - +0.2
1,046,321 + -0.0
1,046,329 - +0.2
1,047,565 - +0.2
1,047,726 + +0.1

Or see this region's nucleotide sequence