Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS14900

Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS14895 and RALBFv3_RS14900 are separated by 34 nucleotidesRALBFv3_RS14900 and RALBFv3_RS24075 are separated by 137 nucleotidesRALBFv3_RS24075 and RALBFv3_RS14905 are separated by 227 nucleotides RALBFv3_RS14895: RALBFv3_RS14895 - outer membrane protein assembly factor BamC, at 3,243,638 to 3,244,834 _RS14895 RALBFv3_RS14900: RALBFv3_RS14900 - MBL fold metallo-hydrolase, at 3,244,869 to 3,245,654 _RS14900 RALBFv3_RS24075: RALBFv3_RS24075 - hypothetical protein, at 3,245,792 to 3,246,070 _RS24075 RALBFv3_RS14905: RALBFv3_RS14905 - cupin domain-containing protein, at 3,246,298 to 3,247,527 _RS14905 Position (kb) 3244 3245 3246Strain fitness (log2 ratio) -2 -1 0 1 2at 3244.617 kb on - strand, within RALBFv3_RS14895at 3245.082 kb on + strand, within RALBFv3_RS14900at 3245.513 kb on + strand, within RALBFv3_RS14900at 3245.514 kb on - strand, within RALBFv3_RS14900at 3246.120 kb on + strandat 3246.125 kb on - strandat 3246.131 kb on - strandat 3246.161 kb on + strandat 3246.161 kb on + strandat 3246.162 kb on - strandat 3246.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
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3,244,617 - RALBFv3_RS14895 0.82 -1.1
3,245,082 + RALBFv3_RS14900 0.27 -0.4
3,245,513 + RALBFv3_RS14900 0.82 +1.5
3,245,514 - RALBFv3_RS14900 0.82 +2.1
3,246,120 + -0.2
3,246,125 - +1.4
3,246,131 - -1.8
3,246,161 + +0.3
3,246,161 + -1.3
3,246,162 - -0.1
3,246,242 + +0.5

Or see this region's nucleotide sequence