Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02040

Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02030 and RALBFv3_RS02035 are separated by 312 nucleotidesRALBFv3_RS02035 and RALBFv3_RS02040 are separated by 39 nucleotidesRALBFv3_RS02040 and RALBFv3_RS02045 are separated by 184 nucleotides RALBFv3_RS02030: RALBFv3_RS02030 - universal stress protein, at 455,985 to 456,485 _RS02030 RALBFv3_RS02035: RALBFv3_RS02035 - CBS domain-containing protein, at 456,798 to 457,268 _RS02035 RALBFv3_RS02040: RALBFv3_RS02040 - DUF2892 domain-containing protein, at 457,308 to 457,502 _RS02040 RALBFv3_RS02045: RALBFv3_RS02045 - universal stress protein, at 457,687 to 458,142 _RS02045 Position (kb) 457 458Strain fitness (log2 ratio) -2 -1 0 1 2at 456.317 kb on + strand, within RALBFv3_RS02030at 456.348 kb on + strand, within RALBFv3_RS02030at 456.672 kb on + strandat 456.732 kb on + strandat 456.733 kb on - strandat 456.778 kb on + strandat 456.778 kb on + strandat 456.778 kb on + strandat 456.779 kb on - strandat 456.779 kb on - strandat 456.779 kb on - strandat 457.461 kb on + strand, within RALBFv3_RS02040at 457.462 kb on - strand, within RALBFv3_RS02040at 457.628 kb on + strandat 457.629 kb on - strandat 457.691 kb on - strandat 457.691 kb on - strandat 457.691 kb on - strandat 458.278 kb on - strandat 458.278 kb on - strandat 458.278 kb on - strandat 458.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
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456,317 + RALBFv3_RS02030 0.66 +2.3
456,348 + RALBFv3_RS02030 0.72 +0.1
456,672 + +0.8
456,732 + -0.8
456,733 - -1.5
456,778 + -0.8
456,778 + +0.6
456,778 + +0.5
456,779 - +1.0
456,779 - -1.2
456,779 - -2.5
457,461 + RALBFv3_RS02040 0.78 -1.3
457,462 - RALBFv3_RS02040 0.79 -0.2
457,628 + -0.9
457,629 - +1.0
457,691 - -0.5
457,691 - +0.7
457,691 - +0.1
458,278 - -1.1
458,278 - -0.7
458,278 - -0.3
458,461 - -0.5

Or see this region's nucleotide sequence