Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00970 and RALBFv3_RS00975 overlap by 4 nucleotides RALBFv3_RS00975 and RALBFv3_RS00980 overlap by 4 nucleotides RALBFv3_RS00980 and RALBFv3_RS00985 are separated by 2 nucleotides
RALBFv3_RS00970: RALBFv3_RS00970 - ABC transporter ATP-binding protein, at 215,343 to 216,416
_RS00970
RALBFv3_RS00975: RALBFv3_RS00975 - ABC transporter permease, at 216,413 to 217,210
_RS00975
RALBFv3_RS00980: RALBFv3_RS00980 - ABC transporter permease, at 217,207 to 218,055
_RS00980
RALBFv3_RS00985: RALBFv3_RS00985 - ABC transporter substrate-binding protein, at 218,058 to 219,101
_RS00985
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 215.704 kb on + strand, within RALBFv3_RS00970 at 215.803 kb on + strand, within RALBFv3_RS00970 at 215.804 kb on - strand, within RALBFv3_RS00970 at 215.993 kb on - strand, within RALBFv3_RS00970 at 216.130 kb on + strand, within RALBFv3_RS00970 at 216.130 kb on + strand, within RALBFv3_RS00970 at 216.505 kb on + strand, within RALBFv3_RS00975 at 216.506 kb on - strand, within RALBFv3_RS00975 at 216.506 kb on - strand, within RALBFv3_RS00975 at 216.507 kb on + strand, within RALBFv3_RS00975 at 216.538 kb on + strand, within RALBFv3_RS00975 at 216.541 kb on - strand, within RALBFv3_RS00975 at 217.044 kb on + strand, within RALBFv3_RS00975 at 217.105 kb on - strand, within RALBFv3_RS00975 at 217.105 kb on - strand, within RALBFv3_RS00975 at 217.337 kb on + strand, within RALBFv3_RS00980 at 217.337 kb on + strand, within RALBFv3_RS00980 at 217.337 kb on + strand, within RALBFv3_RS00980 at 217.581 kb on - strand, within RALBFv3_RS00980 at 217.581 kb on - strand, within RALBFv3_RS00980 at 217.896 kb on - strand, within RALBFv3_RS00980 at 218.077 kb on + strand at 218.077 kb on + strand at 218.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 215,704 + RALBFv3_RS00970 0.34 +0.5 215,803 + RALBFv3_RS00970 0.43 +0.9 215,804 - RALBFv3_RS00970 0.43 +0.3 215,993 - RALBFv3_RS00970 0.61 +0.6 216,130 + RALBFv3_RS00970 0.73 +0.5 216,130 + RALBFv3_RS00970 0.73 -1.8 216,505 + RALBFv3_RS00975 0.12 -0.9 216,506 - RALBFv3_RS00975 0.12 +0.4 216,506 - RALBFv3_RS00975 0.12 -0.3 216,507 + RALBFv3_RS00975 0.12 -1.4 216,538 + RALBFv3_RS00975 0.16 -0.5 216,541 - RALBFv3_RS00975 0.16 -0.5 217,044 + RALBFv3_RS00975 0.79 -0.3 217,105 - RALBFv3_RS00975 0.87 -1.5 217,105 - RALBFv3_RS00975 0.87 +1.2 217,337 + RALBFv3_RS00980 0.15 +0.7 217,337 + RALBFv3_RS00980 0.15 -0.5 217,337 + RALBFv3_RS00980 0.15 +1.4 217,581 - RALBFv3_RS00980 0.44 +0.5 217,581 - RALBFv3_RS00980 0.44 +2.8 217,896 - RALBFv3_RS00980 0.81 +1.4 218,077 + +0.8 218,077 + +0.4 218,144 - +0.5
Or see this region's nucleotide sequence