Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3704

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
4,111,635	+		Pf1N1B4_3702	0.85	-3.7
4,111,719	+				+0.0
4,111,734	+				+0.0
4,111,746	-				+0.0
4,111,753	+				+0.0
4,111,915	+				+0.0
4,111,916	-				-3.3
4,112,280	+		Pf1N1B4_3703	0.73	+0.0
4,112,280	+		Pf1N1B4_3703	0.73	+0.0
4,112,280	+		Pf1N1B4_3703	0.73	+0.0
4,112,280	+				-3.5
4,112,280	+		Pf1N1B4_3703	0.73	+0.0
4,112,280	+		Pf1N1B4_3703	0.73	+0.0
4,112,281	-		Pf1N1B4_3703	0.73	+0.0
4,112,281	-				+0.0
4,112,281	-		Pf1N1B4_3703	0.73	+0.0
4,112,356	-		Pf1N1B4_3703	0.87	+0.0
4,112,356	-		Pf1N1B4_3703	0.87	+1.0
4,112,370	+				-2.1
4,112,414	+				+0.0
4,112,414	+				+0.0
4,112,414	+				-3.5
4,112,522	+				+0.0
4,112,589	+				-0.8
4,112,589	+				-2.0
4,112,590	-				+0.0
4,112,590	-				+0.0
4,112,776	+				+0.0
4,112,776	+		Pf1N1B4_3704	0.14	+0.0
4,112,776	+		Pf1N1B4_3704	0.14	+0.0
4,112,777	-		Pf1N1B4_3704	0.14	+0.0
4,112,777	-		Pf1N1B4_3704	0.14	-2.5
4,112,980	-		Pf1N1B4_3704	0.30	+0.0
4,112,980	-		Pf1N1B4_3704	0.30	+0.0
4,112,980	-		Pf1N1B4_3704	0.30	+0.0
4,112,982	+		Pf1N1B4_3704	0.30	+0.0
4,112,982	+		Pf1N1B4_3704	0.30	-4.1
4,112,982	+		Pf1N1B4_3704	0.30	-1.9
4,112,982	+		Pf1N1B4_3704	0.30	+0.0
4,112,982	+		Pf1N1B4_3704	0.30	+0.0
4,112,982	+		Pf1N1B4_3704	0.30	+0.0
4,112,982	+		Pf1N1B4_3704	0.30	-2.4
4,112,982	+		Pf1N1B4_3704	0.30	+0.0
4,112,982	+		Pf1N1B4_3704	0.30	-3.3
4,112,983	-		Pf1N1B4_3704	0.30	+0.0
4,112,983	-		Pf1N1B4_3704	0.30	+0.0
4,112,983	-		Pf1N1B4_3704	0.30	+0.0
4,112,983	-		Pf1N1B4_3704	0.30	-3.2
4,112,983	-		Pf1N1B4_3704	0.30	-2.0
4,112,983	-		Pf1N1B4_3704	0.30	+0.0
4,112,983	-		Pf1N1B4_3704	0.30	-1.6
4,112,983	-		Pf1N1B4_3704	0.30	+0.0
4,112,989	-		Pf1N1B4_3704	0.31	+0.0
4,113,030	+				-1.8
4,113,030	+		Pf1N1B4_3704	0.34	-2.1
4,113,031	-		Pf1N1B4_3704	0.34	+0.0
4,113,031	-		Pf1N1B4_3704	0.34	-2.1
4,113,031	-		Pf1N1B4_3704	0.34	-3.1
4,113,031	-		Pf1N1B4_3704	0.34	-1.0
4,113,249	+		Pf1N1B4_3704	0.50	+0.0
4,113,249	+		Pf1N1B4_3704	0.50	+0.0
4,113,249	+		Pf1N1B4_3704	0.50	-1.1
4,113,250	-		Pf1N1B4_3704	0.50	+0.0
4,113,250	-		Pf1N1B4_3704	0.50	+0.0
4,113,250	-		Pf1N1B4_3704	0.50	-2.8
4,113,250	-				-3.2
4,113,250	-		Pf1N1B4_3704	0.50	+0.0
4,113,250	-		Pf1N1B4_3704	0.50	+0.0
4,113,250	-		Pf1N1B4_3704	0.50	-2.7
4,113,250	-		Pf1N1B4_3704	0.50	+0.0
4,113,405	+		Pf1N1B4_3704	0.62	+0.0
4,113,405	+		Pf1N1B4_3704	0.62	+0.0
4,113,405	+		Pf1N1B4_3704	0.62	-3.2
4,113,405	+				-2.9
4,113,405	+		Pf1N1B4_3704	0.62	+0.0
4,113,405	+		Pf1N1B4_3704	0.62	+0.0
4,113,406	-		Pf1N1B4_3704	0.62	+0.0
4,113,406	-				+0.0
4,113,406	-		Pf1N1B4_3704	0.62	+0.0
4,113,406	-		Pf1N1B4_3704	0.62	-2.4
4,113,461	+		Pf1N1B4_3704	0.66	-2.5
4,113,651	+		Pf1N1B4_3704	0.81	+0.0
4,113,651	+		Pf1N1B4_3704	0.81	+0.0
4,113,652	-		Pf1N1B4_3704	0.81	+0.0
4,113,652	-		Pf1N1B4_3704	0.81	-3.0
4,113,652	-		Pf1N1B4_3704	0.81	+0.0
4,113,652	-		Pf1N1B4_3704	0.81	+0.0
4,113,652	-		Pf1N1B4_3704	0.81	-3.2
4,113,652	-		Pf1N1B4_3704	0.81	-2.5
4,113,724	+		Pf1N1B4_3704	0.86	-4.8
4,113,724	+		Pf1N1B4_3704	0.86	+0.0
4,113,724	+		Pf1N1B4_3704	0.86	+0.0
4,113,724	+		Pf1N1B4_3704	0.86	+0.0
4,113,902	+				+0.0
4,113,903	-				-3.5
4,113,915	+				-2.7
4,113,916	-				+0.0
4,113,931	+				+0.0
4,113,931	+				-2.0
4,113,932	-				+0.0
4,113,932	-				-3.1
4,113,932	-				-1.9
4,113,932	-				+0.0
4,113,937	+				-2.3
4,113,937	+				-1.1
4,113,947	+				+0.0
4,113,948	-				-2.6
4,114,013	+				+0.0
4,114,014	-				-2.6
4,114,014	-				+0.0
4,114,014	-				+0.0
4,114,014	-				-3.0
4,114,050	-		Pf1N1B4_3705	0.14	-2.7
4,114,058	+		Pf1N1B4_3705	0.15	+0.0
4,114,058	+		Pf1N1B4_3705	0.15	+0.0
4,114,058	+		Pf1N1B4_3705	0.15	-0.4
4,114,059	-		Pf1N1B4_3705	0.15	-6.0
4,114,077	+		Pf1N1B4_3705	0.18	-3.0
4,114,077	+		Pf1N1B4_3705	0.18	+0.0
4,114,077	+				+0.0
4,114,077	+		Pf1N1B4_3705	0.18	-1.8
4,114,077	+		Pf1N1B4_3705	0.18	-3.0
4,114,077	+		Pf1N1B4_3705	0.18	-2.5
4,114,077	+				+0.0
4,114,078	-		Pf1N1B4_3705	0.18	+0.0
4,114,078	-		Pf1N1B4_3705	0.18	+0.0
4,114,187	+		Pf1N1B4_3705	0.37	+0.0
4,114,280	+		Pf1N1B4_3705	0.53	+0.0
4,114,280	+		Pf1N1B4_3705	0.53	+0.0
4,114,280	+		Pf1N1B4_3705	0.53	+0.0
4,114,440	-		Pf1N1B4_3705	0.80	-2.8
4,114,570	+				-1.8
4,114,570	+				-1.9
4,114,637	+				+0.0
4,114,638	-				+0.0
4,114,638	-				+0.0
4,114,655	+				-2.9
4,114,698	+				-2.9
4,114,846	+				+0.0
4,114,847	-				+0.0