Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3661

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
4,065,570	+				-3.4
4,065,647	+				-2.8
4,065,698	-				-3.8
4,065,698	-				+0.0
4,065,698	-				+0.0
4,065,880	+		Pf1N1B4_3660	0.31	-2.3
4,065,880	+		Pf1N1B4_3660	0.31	+0.0
4,065,881	-		Pf1N1B4_3660	0.31	-3.4
4,065,881	-		Pf1N1B4_3660	0.31	+0.0
4,065,881	-		Pf1N1B4_3660	0.31	-2.2
4,065,881	-		Pf1N1B4_3660	0.31	-3.6
4,065,881	-		Pf1N1B4_3660	0.31	-1.9
4,065,881	-		Pf1N1B4_3660	0.31	+0.0
4,065,889	+		Pf1N1B4_3660	0.32	+0.0
4,065,958	+		Pf1N1B4_3660	0.41	+0.0
4,066,036	+		Pf1N1B4_3660	0.51	+0.0
4,066,037	-		Pf1N1B4_3660	0.51	-2.0
4,066,306	+		Pf1N1B4_3660	0.86	+0.0
4,066,306	+		Pf1N1B4_3660	0.86	-3.7
4,066,318	+		Pf1N1B4_3660	0.87	-2.2
4,066,318	+		Pf1N1B4_3660	0.87	+0.0
4,066,440	-				+0.0
4,066,440	-				+0.0
4,066,854	+		Pf1N1B4_3661	0.17	-1.7
4,066,854	+		Pf1N1B4_3661	0.17	+0.0
4,066,854	+		Pf1N1B4_3661	0.17	-1.3
4,066,926	+		Pf1N1B4_3661	0.21	+0.0
4,066,926	+		Pf1N1B4_3661	0.21	-2.5
4,066,927	-		Pf1N1B4_3661	0.21	-1.9
4,066,927	-		Pf1N1B4_3661	0.21	+0.0
4,066,927	-		Pf1N1B4_3661	0.21	-1.8
4,066,983	+		Pf1N1B4_3661	0.25	+0.0
4,066,983	+		Pf1N1B4_3661	0.25	+0.0
4,066,984	-		Pf1N1B4_3661	0.25	+0.0
4,066,984	-		Pf1N1B4_3661	0.25	-1.3
4,066,984	-				+0.0
4,066,984	-		Pf1N1B4_3661	0.25	-1.0
4,067,103	+		Pf1N1B4_3661	0.31	+0.0
4,067,104	-		Pf1N1B4_3661	0.31	-2.0
4,067,104	-		Pf1N1B4_3661	0.31	-2.1
4,067,157	+		Pf1N1B4_3661	0.34	+0.0
4,067,157	+		Pf1N1B4_3661	0.34	+0.0
4,067,158	-		Pf1N1B4_3661	0.34	+0.0
4,067,158	-		Pf1N1B4_3661	0.34	+0.0
4,067,158	-		Pf1N1B4_3661	0.34	-2.7
4,067,197	-		Pf1N1B4_3661	0.37	+0.0
4,067,197	-		Pf1N1B4_3661	0.37	+0.0
4,067,219	+		Pf1N1B4_3661	0.38	+0.0
4,067,449	-		Pf1N1B4_3661	0.51	+0.0
4,067,790	+		Pf1N1B4_3661	0.70	+0.0
4,067,791	-		Pf1N1B4_3661	0.70	-2.2
4,067,791	-		Pf1N1B4_3661	0.70	+0.0
4,067,791	-		Pf1N1B4_3661	0.70	+0.0
4,067,880	+		Pf1N1B4_3661	0.75	+0.0
4,067,881	-		Pf1N1B4_3661	0.75	+0.0
4,067,881	-		Pf1N1B4_3661	0.75	-3.1
4,067,881	-		Pf1N1B4_3661	0.75	+0.0
4,067,881	-		Pf1N1B4_3661	0.75	+0.0
4,067,881	-		Pf1N1B4_3661	0.75	-2.1
4,067,958	-		Pf1N1B4_3661	0.79	-1.4
4,067,958	-		Pf1N1B4_3661	0.79	+0.0
4,067,958	-		Pf1N1B4_3661	0.79	+0.0
4,068,061	-				+0.0
4,068,222	+				+0.0
4,068,353	-				-1.8
4,068,355	-				+0.0
4,068,377	+		Pf1N1B4_3662	0.18	-3.6
4,068,377	+		Pf1N1B4_3662	0.18	-2.8
4,068,377	+		Pf1N1B4_3662	0.18	+0.0
4,068,377	+		Pf1N1B4_3662	0.18	-2.0
4,068,378	-		Pf1N1B4_3662	0.19	+0.0
4,068,378	-		Pf1N1B4_3662	0.19	+0.0
4,068,378	-		Pf1N1B4_3662	0.19	+0.0
4,068,378	-		Pf1N1B4_3662	0.19	+0.0
4,068,378	-		Pf1N1B4_3662	0.19	+0.0
4,068,378	-		Pf1N1B4_3662	0.19	-1.7
4,068,378	-		Pf1N1B4_3662	0.19	+0.0
4,068,378	-		Pf1N1B4_3662	0.19	+0.0
4,068,599	+				+0.0
4,068,707	+		Pf1N1B4_3663	0.45	-1.0
4,069,096	-				+0.0
4,069,129	-				-2.7
4,069,177	+				-3.2
4,069,178	-				+0.0
4,069,178	-				-1.0
4,069,178	-				+0.0
4,069,178	-				+0.0
4,069,178	-				-3.1
4,069,178	-				+0.0
4,069,178	-				+0.0
4,069,178	-				+0.0
4,069,202	+				-0.9
4,069,203	-				-2.9
4,069,250	+				+0.0
4,069,251	-				-3.1
4,069,251	-				+0.0
4,069,269	-				-1.3
4,069,303	+				-2.3
4,069,314	+				-0.9
4,069,315	-				+0.0
4,069,315	-				-2.0
4,069,315	-				+0.0
4,069,320	+				+0.0
4,069,320	+				+0.0
4,069,321	-				+0.0
4,069,321	-				+0.0
4,069,321	-				+0.0
4,069,321	-				-2.0
4,069,321	-				-2.4