Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3287

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
3,671,727	-				-3.3
3,671,729	+				-0.0
3,671,729	+				-0.0
3,671,729	+				-2.1
3,671,729	+				-0.0
3,671,730	-				-3.0
3,671,732	-				-2.6
3,671,732	-				-1.8
3,671,811	+				-0.0
3,671,811	+				-3.9
3,671,812	-				-3.2
3,671,812	-				-0.0
3,671,855	-				-0.0
3,671,908	-				-0.0
3,671,959	-				-0.0
3,671,959	-				-0.0
3,671,959	-				-2.3
3,671,959	-				-3.1
3,671,959	-				-0.0
3,671,959	-				-0.0
3,671,959	-				-1.5
3,671,959	-				-0.0
3,671,959	-				-2.7
3,671,965	+				-1.6
3,671,966	-				-0.0
3,671,966	-				-2.1
3,671,966	-				-0.0
3,671,997	-				-0.0
3,671,997	-				-0.0
3,671,998	+		Pf1N1B4_3286	0.10	-0.0
3,671,998	+		Pf1N1B4_3286	0.10	-0.0
3,671,998	+		Pf1N1B4_3286	0.10	-1.7
3,671,998	+		Pf1N1B4_3286	0.10	-0.0
3,671,999	-		Pf1N1B4_3286	0.10	-2.5
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,671,999	-				-3.1
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,671,999	-		Pf1N1B4_3286	0.10	-0.0
3,672,065	-		Pf1N1B4_3286	0.30	-0.0
3,672,065	-		Pf1N1B4_3286	0.30	-0.0
3,672,065	-		Pf1N1B4_3286	0.30	-0.0
3,672,065	-		Pf1N1B4_3286	0.30	-0.0
3,672,098	-		Pf1N1B4_3286	0.40	-3.4
3,672,334	-				-0.0
3,672,334	-				-0.0
3,672,334	-				-0.0
3,672,334	-				-0.0
3,672,334	-				-2.1
3,672,334	-				-0.0
3,672,334	-				-0.0
3,672,399	-				-0.0
3,672,399	-				-0.0
3,672,400	+				-1.7
3,672,401	-				-0.0
3,672,455	-				-0.0
3,672,469	+				-1.0
3,672,469	+				-0.0
3,672,470	-				-0.0
3,672,470	-				-0.0
3,672,470	-				-0.0
3,672,486	-				-2.0
3,672,486	-				-1.5
3,672,489	+				-0.0
3,672,490	-				-0.0
3,672,490	-				-0.0
3,672,490	-				-0.0
3,672,490	-				-0.0
3,672,490	-				-2.1
3,672,490	-				-0.0
3,672,490	-				-0.0
3,672,490	-				-3.1
3,672,490	-				-0.0
3,672,491	+				-0.0
3,672,492	-				-3.0
3,672,492	-				-0.0
3,672,492	-				-2.8
3,672,492	-				-0.0
3,672,521	+				-0.0
3,672,539	-				+1.0
3,672,587	+				-0.0
3,672,589	+				-0.0
3,672,590	-				-0.0
3,672,590	-				-3.7
3,672,590	-				-0.0
3,672,590	-				-2.3
3,672,686	+				-0.0
3,672,709	-				-2.4
3,672,715	+				-2.6
3,672,726	+				-0.0
3,672,727	-				-0.0
3,672,756	+				-1.5
3,672,757	-				-0.0
3,672,759	+				-2.1
3,672,805	-				-0.0
3,672,864	+		Pf1N1B4_3287	0.11	-2.6
3,672,868	+		Pf1N1B4_3287	0.11	-2.1
3,672,869	-		Pf1N1B4_3287	0.11	-0.0
3,672,869	-		Pf1N1B4_3287	0.11	-1.4
3,672,920	+				-0.0
3,672,921	-		Pf1N1B4_3287	0.15	-2.5
3,672,954	+		Pf1N1B4_3287	0.17	-0.0
3,672,954	+		Pf1N1B4_3287	0.17	-2.2
3,672,959	-		Pf1N1B4_3287	0.18	-1.5
3,673,010	+		Pf1N1B4_3287	0.21	-2.3
3,673,011	-		Pf1N1B4_3287	0.21	-2.2
3,673,011	-		Pf1N1B4_3287	0.21	-0.0
3,673,043	+		Pf1N1B4_3287	0.23	-3.2
3,673,195	+				-3.6
3,673,195	+		Pf1N1B4_3287	0.34	-0.0
3,673,196	-		Pf1N1B4_3287	0.34	-0.0
3,673,196	-		Pf1N1B4_3287	0.34	-1.7
3,673,361	+		Pf1N1B4_3287	0.45	-1.8
3,673,361	+		Pf1N1B4_3287	0.45	-0.0
3,673,361	+		Pf1N1B4_3287	0.45	-3.0
3,673,362	-		Pf1N1B4_3287	0.45	-2.0
3,673,382	+				-0.8
3,673,392	+		Pf1N1B4_3287	0.47	-0.0
3,673,392	+		Pf1N1B4_3287	0.47	-1.7
3,673,400	+				-0.0
3,673,400	+		Pf1N1B4_3287	0.48	-4.3
3,673,586	-		Pf1N1B4_3287	0.60	-4.0
3,673,670	+		Pf1N1B4_3287	0.66	-0.0
3,673,670	+		Pf1N1B4_3287	0.66	-0.0
3,673,741	+		Pf1N1B4_3287	0.71	-1.0
3,673,742	-		Pf1N1B4_3287	0.71	-2.6
3,673,946	+		Pf1N1B4_3287	0.85	-2.4
3,673,947	-		Pf1N1B4_3287	0.85	-0.0
3,674,000	+		Pf1N1B4_3287	0.89	-0.0
3,674,001	-		Pf1N1B4_3287	0.89	-0.0
3,674,001	-		Pf1N1B4_3287	0.89	-0.0
3,674,001	-		Pf1N1B4_3287	0.89	-1.5
3,674,002	+		Pf1N1B4_3287	0.89	-2.9
3,674,002	+		Pf1N1B4_3287	0.89	-2.8
3,674,002	+		Pf1N1B4_3287	0.89	-2.1
3,674,002	+		Pf1N1B4_3287	0.89	-0.0
3,674,002	+				-2.6
3,674,003	-		Pf1N1B4_3287	0.89	-0.0
3,674,003	-		Pf1N1B4_3287	0.89	-0.0
3,674,003	-		Pf1N1B4_3287	0.89	-2.5
3,674,003	-		Pf1N1B4_3287	0.89	-2.6
3,674,003	-		Pf1N1B4_3287	0.89	-0.0
3,674,003	-		Pf1N1B4_3287	0.89	-0.2
3,674,003	-		Pf1N1B4_3287	0.89	-0.0
3,674,004	+		Pf1N1B4_3287	0.89	-0.0
3,674,004	+		Pf1N1B4_3287	0.89	-0.0
3,674,005	-		Pf1N1B4_3287	0.89	-0.0
3,674,005	-				-0.0
3,674,005	-		Pf1N1B4_3287	0.89	-3.4
3,674,005	-		Pf1N1B4_3287	0.89	-2.4
3,674,005	-		Pf1N1B4_3287	0.89	-1.5
3,674,005	-		Pf1N1B4_3287	0.89	+0.1
3,674,005	-		Pf1N1B4_3287	0.89	-0.0
3,674,005	-		Pf1N1B4_3287	0.89	-0.0
3,674,111	-				-0.0
3,674,166	-				-0.0
3,674,252	+				-0.0
3,674,252	+				-3.5
3,674,252	+				-0.0
3,674,253	-				-0.0
3,674,253	-				-1.3
3,674,281	+				-0.0
3,674,281	+				-0.0
3,674,281	+				-2.4
3,674,281	+				-0.0
3,674,281	+				-0.0
3,674,281	+				-2.6
3,674,281	+				-0.0
3,674,282	-				-4.1
3,674,282	-				-2.6
3,674,282	-				-0.0
3,674,282	-				-0.0
3,674,282	-				-0.0
3,674,282	-				-2.9
3,674,282	-				-2.2
3,674,282	-				-0.0
3,674,283	+				-0.2
3,674,283	+				-0.0
3,674,283	+				-0.0
3,674,283	+				-2.6
3,674,283	+				-1.7
3,674,283	+				-0.0
3,674,284	-				-2.7
3,674,309	+				-0.0
3,674,310	-				-0.0
3,674,320	+				-0.0
3,674,320	+				-0.0
3,674,336	+				-1.5
3,674,381	+				-1.5
3,674,382	-				-0.0
3,674,382	-				-0.0
3,674,428	+		Pf1N1B4_3288	0.12	-2.1
3,674,428	+		Pf1N1B4_3288	0.12	-0.0
3,674,428	+		Pf1N1B4_3288	0.12	-0.0
3,674,428	+		Pf1N1B4_3288	0.12	-3.6
3,674,428	+		Pf1N1B4_3288	0.12	-2.1
3,674,428	+		Pf1N1B4_3288	0.12	-2.4
3,674,428	+				-0.0
3,674,429	-		Pf1N1B4_3288	0.12	-0.0
3,674,429	-		Pf1N1B4_3288	0.12	-0.0
3,674,431	+				-0.0
3,674,431	+		Pf1N1B4_3288	0.12	-0.0
3,674,432	-		Pf1N1B4_3288	0.12	-0.0
3,674,432	-				-1.4
3,674,470	+		Pf1N1B4_3288	0.14	-0.0
3,674,470	+		Pf1N1B4_3288	0.14	-3.5
3,674,470	+		Pf1N1B4_3288	0.14	-3.0
3,674,470	+		Pf1N1B4_3288	0.14	-0.0
3,674,470	+				-3.2
3,674,470	+		Pf1N1B4_3288	0.14	-3.3
3,674,471	-		Pf1N1B4_3288	0.14	-1.8
3,674,471	-		Pf1N1B4_3288	0.14	-2.3
3,674,471	-		Pf1N1B4_3288	0.14	-0.0
3,674,471	-		Pf1N1B4_3288	0.14	-0.0
3,674,471	-		Pf1N1B4_3288	0.14	-0.0
3,674,509	+		Pf1N1B4_3288	0.16	-2.9
3,674,509	+		Pf1N1B4_3288	0.16	-3.0
3,674,509	+		Pf1N1B4_3288	0.16	-0.0
3,674,509	+		Pf1N1B4_3288	0.16	-0.0
3,674,510	-		Pf1N1B4_3288	0.16	-2.4
3,674,510	-		Pf1N1B4_3288	0.16	-0.0
3,674,510	-		Pf1N1B4_3288	0.16	-0.0
3,674,510	-		Pf1N1B4_3288	0.16	-1.6
3,674,510	-		Pf1N1B4_3288	0.16	-0.0
3,674,554	+		Pf1N1B4_3288	0.19	-0.0
3,674,555	-		Pf1N1B4_3288	0.19	-2.3
3,674,555	-		Pf1N1B4_3288	0.19	-0.0
3,674,573	-		Pf1N1B4_3288	0.20	-3.1
3,674,581	+		Pf1N1B4_3288	0.20	-2.6
3,674,581	+		Pf1N1B4_3288	0.20	-2.1
3,674,581	+		Pf1N1B4_3288	0.20	-0.0
3,674,582	-				-0.0
3,674,736	+		Pf1N1B4_3288	0.29	-0.0
3,674,737	-		Pf1N1B4_3288	0.29	-4.2
3,674,767	+				-0.0
3,674,767	+		Pf1N1B4_3288	0.31	-0.0
3,674,768	-		Pf1N1B4_3288	0.31	-0.0
3,674,768	-		Pf1N1B4_3288	0.31	-0.0
3,674,918	+		Pf1N1B4_3288	0.39	-0.0
3,674,918	+		Pf1N1B4_3288	0.39	-0.0
3,674,918	+		Pf1N1B4_3288	0.39	-0.0
3,674,919	-		Pf1N1B4_3288	0.39	-0.0
3,674,919	-		Pf1N1B4_3288	0.39	-0.0
3,674,938	-		Pf1N1B4_3288	0.41	-4.4
3,674,938	-				-3.2
3,674,997	-		Pf1N1B4_3288	0.44	-1.0
3,674,997	-		Pf1N1B4_3288	0.44	-0.0
3,674,997	-		Pf1N1B4_3288	0.44	-0.0
3,675,037	+				-0.0
3,675,037	+		Pf1N1B4_3288	0.46	-0.0
3,675,037	+		Pf1N1B4_3288	0.46	-0.0
3,675,038	-		Pf1N1B4_3288	0.46	-0.0
3,675,038	-		Pf1N1B4_3288	0.46	-3.9
3,675,135	+		Pf1N1B4_3288	0.52	-0.0
3,675,136	-		Pf1N1B4_3288	0.52	-1.5
3,675,149	+		Pf1N1B4_3288	0.52	-0.0
3,675,150	-		Pf1N1B4_3288	0.52	-2.8