Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3002

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
3,374,947	+		Pf1N1B4_3000	0.87	-0.0
3,374,948	-		Pf1N1B4_3000	0.87	-0.0
3,374,948	-		Pf1N1B4_3000	0.87	-1.7
3,374,948	-		Pf1N1B4_3000	0.87	-0.0
3,375,072	-				-0.0
3,375,139	+				-1.7
3,375,139	+				-0.0
3,375,139	+				-0.0
3,375,139	+				-0.0
3,375,140	-				-0.0
3,375,140	-				-0.0
3,375,140	-				-0.0
3,375,197	+				-2.4
3,375,197	+				-0.0
3,375,198	-				-0.0
3,375,198	-				-2.9
3,375,387	+		Pf1N1B4_3001	0.27	-2.7
3,375,388	-		Pf1N1B4_3001	0.28	-1.9
3,375,388	-		Pf1N1B4_3001	0.28	-4.1
3,375,388	-		Pf1N1B4_3001	0.28	-0.0
3,375,457	-		Pf1N1B4_3001	0.52	-3.4
3,375,533	-		Pf1N1B4_3001	0.78	-0.0
3,375,559	+		Pf1N1B4_3001	0.87	-0.0
3,375,559	+		Pf1N1B4_3001	0.87	-3.1
3,375,560	-				-0.0
3,375,560	-		Pf1N1B4_3001	0.88	-1.4
3,375,679	+				-2.9
3,375,679	+				-1.1
3,375,679	+				-0.5
3,375,679	+				-0.0
3,375,679	+				-2.5
3,375,680	-				-0.0
3,375,680	-				-0.0
3,375,680	-				-0.0
3,375,680	-				-0.0
3,375,680	-				-0.0
3,375,805	+				-2.2
3,375,838	+				-1.3
3,375,838	+				-2.9
3,375,838	+				-0.0
3,375,838	+				-0.0
3,375,838	+				-0.0
3,375,838	+				-2.2
3,375,839	-				-0.0
3,375,839	-				-1.2
3,375,917	+		Pf1N1B4_3002	0.28	-1.3
3,375,918	-		Pf1N1B4_3002	0.28	-0.0
3,375,918	-		Pf1N1B4_3002	0.28	-0.0
3,375,928	+		Pf1N1B4_3002	0.35	-0.0
3,376,031	+				-2.4
3,376,031	+				-0.0
3,376,031	+				-0.0
3,376,031	+				-2.2
3,376,031	+				-0.0
3,376,031	+				-0.0
3,376,032	-				-0.0
3,376,032	-				-1.5
3,376,032	-				-0.0
3,376,032	-				-0.0
3,376,035	+				-0.0
3,376,036	-				-0.0
3,376,085	+				-0.0
3,376,228	+				-0.0
3,376,229	-				-0.0
3,376,279	+				-0.0
3,376,340	+				-0.0
3,376,341	-				-0.0
3,376,341	-				-1.5
3,376,341	-				-0.0
3,376,341	-				-0.0
3,376,355	+				-0.0
3,376,356	-				-2.2
3,376,356	-				-1.4
3,376,357	+				-0.0
3,376,357	+				-0.0
3,376,357	+				-3.1
3,376,357	+				-0.0
3,376,357	+				-0.0
3,376,357	+				-0.0
3,376,357	+				-3.1
3,376,357	+				-2.7
3,376,357	+				-2.6
3,376,357	+				-2.8
3,376,357	+				-0.0
3,376,357	+				-0.0
3,376,357	+				-0.0
3,376,357	+				-0.0
3,376,358	-				-0.0
3,376,358	-				-0.8
3,376,358	-				-0.0
3,376,358	-				-0.0
3,376,358	-				-1.6
3,376,358	-				-0.9
3,376,358	-				-2.5
3,376,358	-				-0.0
3,376,358	-				-0.0
3,376,358	-				-0.0
3,376,358	-				-0.0
3,376,358	-				-0.0
3,376,363	+				-0.0
3,376,363	+				-0.0
3,376,363	+				-0.0
3,376,363	+				-0.0
3,376,363	+				-1.8
3,376,363	+				-0.0
3,376,364	-				-2.6
3,376,364	-				-0.0
3,376,364	-				-0.0
3,376,364	-				-0.0
3,376,572	+				-2.0
3,376,572	+				-0.0
3,376,572	+				-1.3
3,376,572	+				-0.0
3,376,578	+				-1.7
3,376,579	-				-2.3
3,376,798	+				-0.0
3,376,799	-				-3.3
3,376,799	-				-0.0
3,376,799	-				-0.0
3,376,799	-				-0.0
3,376,799	-				-3.9
3,376,808	+				-3.3
3,376,808	+				-2.4
3,376,808	+				-0.0
3,376,809	-				-0.0
3,376,809	-				-3.8
3,376,814	+				-0.0
3,376,857	+				-0.0
3,376,874	+				+1.6
3,376,875	-				-0.0
3,376,875	-				-0.0
3,376,892	+				-1.9
3,376,893	-				-3.1
3,376,893	-				-0.0
3,376,893	-				-0.0
3,376,893	-				-3.3
3,376,893	-				-0.0
3,376,903	+				-2.8
3,376,903	+				-2.2
3,376,904	-				-2.5
3,376,904	-				-0.0
3,376,959	-				-0.0
3,376,959	-				-0.0
3,377,023	+				-1.7
3,377,023	+				-0.0
3,377,024	-				-2.6
3,377,024	-				-0.0