Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2738

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
3,076,399	+		Pf1N1B4_2737	0.52	-3.8
3,076,400	-		Pf1N1B4_2737	0.52	-2.5
3,076,400	-		Pf1N1B4_2737	0.52	-0.0
3,076,400	-		Pf1N1B4_2737	0.52	-0.0
3,076,576	-		Pf1N1B4_2737	0.66	-3.4
3,076,579	+		Pf1N1B4_2737	0.66	+1.0
3,076,579	+		Pf1N1B4_2737	0.66	-1.3
3,076,579	+		Pf1N1B4_2737	0.66	-1.9
3,076,579	+		Pf1N1B4_2737	0.66	-0.0
3,076,579	+		Pf1N1B4_2737	0.66	-0.0
3,076,579	+		Pf1N1B4_2737	0.66	-2.4
3,076,579	+		Pf1N1B4_2737	0.66	-0.0
3,076,580	-		Pf1N1B4_2737	0.66	-1.9
3,076,580	-		Pf1N1B4_2737	0.66	-0.0
3,076,580	-		Pf1N1B4_2737	0.66	-0.0
3,076,580	-		Pf1N1B4_2737	0.66	-0.0
3,076,729	+		Pf1N1B4_2737	0.78	-0.0
3,076,763	+		Pf1N1B4_2737	0.81	-0.0
3,076,763	+		Pf1N1B4_2737	0.81	-0.0
3,076,764	-		Pf1N1B4_2737	0.81	-2.6
3,076,764	-		Pf1N1B4_2737	0.81	-0.0
3,076,862	+				-0.0
3,076,863	-		Pf1N1B4_2737	0.88	-1.7
3,077,013	+				-3.1
3,077,013	+				-0.0
3,077,013	+				-0.0
3,077,013	+				-0.0
3,077,013	+				-2.6
3,077,014	-				-0.0
3,077,086	+				-0.0
3,077,086	+				-2.9
3,077,087	-				-0.0
3,077,087	-				-1.8
3,077,173	+				-3.2
3,077,174	-				-0.0
3,077,174	-				-0.0
3,077,252	-				-2.5
3,077,487	+		Pf1N1B4_2738	0.25	-3.0
3,077,487	+		Pf1N1B4_2738	0.25	-0.0
3,077,487	+		Pf1N1B4_2738	0.25	-0.7
3,077,488	-		Pf1N1B4_2738	0.25	-0.0
3,077,488	-		Pf1N1B4_2738	0.25	-2.9
3,077,509	-		Pf1N1B4_2738	0.28	-0.0
3,077,523	+		Pf1N1B4_2738	0.29	-0.0
3,077,523	+		Pf1N1B4_2738	0.29	-2.1
3,077,523	+		Pf1N1B4_2738	0.29	-0.0
3,077,524	-		Pf1N1B4_2738	0.29	-0.0
3,077,524	-		Pf1N1B4_2738	0.29	-3.3
3,077,524	-		Pf1N1B4_2738	0.29	-1.8
3,077,553	+		Pf1N1B4_2738	0.32	-0.0
3,077,553	+		Pf1N1B4_2738	0.32	-0.0
3,077,554	-		Pf1N1B4_2738	0.32	-0.0
3,077,751	+		Pf1N1B4_2738	0.54	-0.0
3,077,751	+		Pf1N1B4_2738	0.54	-0.0
3,077,805	+		Pf1N1B4_2738	0.60	-0.0
3,077,805	+		Pf1N1B4_2738	0.60	-1.0
3,077,805	+		Pf1N1B4_2738	0.60	-3.3
3,077,806	-		Pf1N1B4_2738	0.60	-0.0
3,077,806	-		Pf1N1B4_2738	0.60	-0.0
3,077,976	+		Pf1N1B4_2738	0.78	-3.0
3,077,976	+		Pf1N1B4_2738	0.78	-0.0
3,077,976	+		Pf1N1B4_2738	0.78	-2.7
3,077,976	+		Pf1N1B4_2738	0.78	-2.2
3,077,976	+		Pf1N1B4_2738	0.78	-0.0
3,077,977	-		Pf1N1B4_2738	0.78	-0.0
3,077,977	-		Pf1N1B4_2738	0.78	-0.0
3,077,977	-		Pf1N1B4_2738	0.78	-0.0
3,077,977	-		Pf1N1B4_2738	0.78	-0.0
3,077,987	-		Pf1N1B4_2738	0.79	-0.0
3,077,988	+		Pf1N1B4_2738	0.80	-3.3
3,077,988	+		Pf1N1B4_2738	0.80	-0.0
3,077,988	+		Pf1N1B4_2738	0.80	-0.0
3,077,988	+		Pf1N1B4_2738	0.80	-0.0
3,077,988	+				-1.6
3,077,988	+		Pf1N1B4_2738	0.80	-0.0
3,077,988	+		Pf1N1B4_2738	0.80	-3.1
3,077,988	+		Pf1N1B4_2738	0.80	-3.2
3,077,988	+		Pf1N1B4_2738	0.80	-0.0
3,077,988	+		Pf1N1B4_2738	0.80	-0.0
3,077,988	+		Pf1N1B4_2738	0.80	-4.3
3,077,988	+		Pf1N1B4_2738	0.80	-0.0
3,077,988	+		Pf1N1B4_2738	0.80	-3.9
3,077,988	+		Pf1N1B4_2738	0.80	-3.1
3,077,989	-		Pf1N1B4_2738	0.80	-2.1
3,077,989	-		Pf1N1B4_2738	0.80	-0.0
3,078,144	+				-0.0
3,078,145	-				-1.8
3,078,145	-				-2.0
3,078,156	+				-0.0
3,078,156	+				-0.0
3,078,157	-				-0.0
3,078,157	-				-2.5
3,078,157	-				-0.0
3,078,184	+				-0.0
3,078,184	+				-0.0
3,078,184	+				-0.0
3,078,184	+				-3.9
3,078,185	-				-0.4
3,078,185	-				-1.6
3,078,185	-				-0.0
3,078,186	+				-2.4
3,078,186	+				-0.0
3,078,186	+				-0.0
3,078,200	+				-0.0
3,078,200	+				-2.9
3,078,200	+				-0.0
3,078,220	+				-0.0
3,078,220	+				-0.0
3,078,221	-				-0.0
3,078,231	+				-0.0
3,078,231	+				-1.7
3,078,231	+				-0.0
3,078,231	+				-0.0
3,078,231	+				-0.0
3,078,232	-				-2.8
3,078,232	-				-2.1
3,078,232	-				-2.1
3,078,232	-				-2.9
3,078,538	+		Pf1N1B4_2739	0.48	-0.0
3,078,539	-		Pf1N1B4_2739	0.48	-2.4
3,078,593	+		Pf1N1B4_2739	0.57	-2.6
3,078,791	+				-3.4
3,078,792	-				-0.0
3,078,792	-				-0.0
3,078,833	+				-2.0
3,078,851	+				-2.2
3,078,851	+				-0.0
3,078,851	+				-0.0
3,078,851	+				-0.0
3,078,852	-				-1.7
3,078,852	-				-2.6
3,078,852	-				-0.0
3,078,852	-				-3.6
3,078,852	-				-0.0
3,078,879	+				-0.0
3,079,057	-		Pf1N1B4_2740	0.13	-2.4
3,079,127	+		Pf1N1B4_2740	0.21	-2.8
3,079,128	-		Pf1N1B4_2740	0.21	-0.0
3,079,128	-		Pf1N1B4_2740	0.21	-2.4
3,079,166	+		Pf1N1B4_2740	0.26	-1.4