Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2512

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
2,846,133	+		Pf1N1B4_2510	0.44	-0.0
2,846,133	+		Pf1N1B4_2510	0.44	-0.0
2,846,134	-		Pf1N1B4_2510	0.45	-0.0
2,846,134	-		Pf1N1B4_2510	0.45	-0.0
2,846,134	-		Pf1N1B4_2510	0.45	-0.0
2,846,140	-		Pf1N1B4_2510	0.47	-0.0
2,846,140	-		Pf1N1B4_2510	0.47	-3.2
2,846,204	+		Pf1N1B4_2510	0.75	-0.0
2,846,205	-		Pf1N1B4_2510	0.75	-2.2
2,846,231	+		Pf1N1B4_2510	0.86	-0.0
2,846,243	+				-0.0
2,846,243	+				-2.1
2,846,252	+				-0.0
2,846,253	-				-0.0
2,846,253	-				-0.0
2,846,253	-				-0.0
2,846,318	+		Pf1N1B4_2511	0.11	-0.0
2,846,319	-		Pf1N1B4_2511	0.11	-0.0
2,846,370	+		Pf1N1B4_2511	0.21	-0.0
2,846,370	+		Pf1N1B4_2511	0.21	-0.0
2,846,370	+		Pf1N1B4_2511	0.21	-0.0
2,846,437	+		Pf1N1B4_2511	0.35	-2.5
2,846,438	-		Pf1N1B4_2511	0.35	-4.8
2,846,443	+		Pf1N1B4_2511	0.36	-2.9
2,846,443	+		Pf1N1B4_2511	0.36	-0.0
2,846,443	+		Pf1N1B4_2511	0.36	-0.0
2,846,443	+		Pf1N1B4_2511	0.36	-0.0
2,846,444	-		Pf1N1B4_2511	0.37	-0.0
2,846,507	+		Pf1N1B4_2511	0.50	-0.0
2,846,589	+		Pf1N1B4_2511	0.67	-0.0
2,846,589	+		Pf1N1B4_2511	0.67	+1.0
2,846,590	-		Pf1N1B4_2511	0.67	-0.0
2,846,619	+		Pf1N1B4_2511	0.73	-0.0
2,846,620	-		Pf1N1B4_2511	0.73	-0.0
2,846,792	+				-0.0
2,846,792	+				-2.0
2,846,792	+				-0.0
2,846,792	+				-0.0
2,846,792	+				-3.4
2,846,820	+				-0.0
2,846,844	-				-0.0
2,846,850	+				-0.0
2,846,850	+				-0.0
2,846,850	+				-2.5
2,846,850	+				-0.0
2,846,850	+				-2.0
2,846,850	+				-2.2
2,846,850	+				-0.0
2,846,850	+				-3.0
2,846,851	-				-1.8
2,846,851	-				-0.0
2,846,851	-				-0.0
2,846,851	-				-0.0
2,846,851	-				-0.0
2,846,851	-				-0.0
2,846,866	+				-0.0
2,846,866	+				-0.0
2,846,867	-				-0.0
2,846,891	+				-2.3
2,846,891	+				-2.6
2,846,891	+				-1.9
2,846,892	-				-2.3
2,846,932	-				-0.0
2,847,031	-				-3.3
2,847,084	-				-0.8
2,847,145	-				-0.0
2,847,349	-				-0.0
2,847,364	-				-0.6
2,847,594	+		Pf1N1B4_2512	0.15	-3.4
2,847,594	+		Pf1N1B4_2512	0.15	-0.0
2,847,595	-		Pf1N1B4_2512	0.15	-0.0
2,847,595	-		Pf1N1B4_2512	0.15	-1.9
2,847,595	-		Pf1N1B4_2512	0.15	-3.4
2,847,595	-		Pf1N1B4_2512	0.15	-0.0
2,847,612	+				-0.1
2,847,612	+		Pf1N1B4_2512	0.15	-1.8
2,847,612	+		Pf1N1B4_2512	0.15	-0.0
2,847,612	+		Pf1N1B4_2512	0.15	-0.0
2,847,612	+		Pf1N1B4_2512	0.15	-0.0
2,847,612	+		Pf1N1B4_2512	0.15	-1.0
2,847,612	+		Pf1N1B4_2512	0.15	-0.0
2,847,612	+		Pf1N1B4_2512	0.15	-1.1
2,847,613	-		Pf1N1B4_2512	0.15	-0.0
2,847,613	-		Pf1N1B4_2512	0.15	-0.0
2,847,638	+		Pf1N1B4_2512	0.16	-0.0
2,847,704	+		Pf1N1B4_2512	0.18	-0.0
2,847,704	+		Pf1N1B4_2512	0.18	-0.0
2,847,704	+		Pf1N1B4_2512	0.18	-2.3
2,847,704	+		Pf1N1B4_2512	0.18	-0.0
2,847,705	-		Pf1N1B4_2512	0.18	-0.0
2,847,705	-		Pf1N1B4_2512	0.18	-0.0
2,847,705	-				-0.0
2,847,705	-		Pf1N1B4_2512	0.18	-3.3
2,847,705	-		Pf1N1B4_2512	0.18	-0.0
2,847,705	-		Pf1N1B4_2512	0.18	-0.0
2,847,789	+		Pf1N1B4_2512	0.20	-0.0
2,847,789	+		Pf1N1B4_2512	0.20	-0.0
2,847,789	+		Pf1N1B4_2512	0.20	-0.0
2,847,789	+		Pf1N1B4_2512	0.20	-0.0
2,847,793	-		Pf1N1B4_2512	0.20	-0.0
2,847,882	+				-1.6
2,847,882	+		Pf1N1B4_2512	0.22	-2.1
2,847,882	+		Pf1N1B4_2512	0.22	-0.0
2,847,921	+		Pf1N1B4_2512	0.23	-1.0
2,847,921	+		Pf1N1B4_2512	0.23	-2.4
2,847,921	+		Pf1N1B4_2512	0.23	-0.0
2,847,921	+		Pf1N1B4_2512	0.23	-0.0
2,847,922	-		Pf1N1B4_2512	0.24	-0.0
2,847,922	-		Pf1N1B4_2512	0.24	-1.0
2,847,922	-		Pf1N1B4_2512	0.24	-0.0
2,847,922	-		Pf1N1B4_2512	0.24	-0.0
2,848,157	+		Pf1N1B4_2512	0.30	-0.0
2,848,158	-		Pf1N1B4_2512	0.30	-0.0
2,848,326	-		Pf1N1B4_2512	0.34	-2.7
2,848,566	+		Pf1N1B4_2512	0.41	-0.0
2,848,566	+		Pf1N1B4_2512	0.41	-0.0
2,848,609	+		Pf1N1B4_2512	0.42	-0.0
2,848,610	-		Pf1N1B4_2512	0.42	-0.0
2,848,643	-		Pf1N1B4_2512	0.43	-3.1
2,848,700	+		Pf1N1B4_2512	0.44	-0.0
2,848,700	+		Pf1N1B4_2512	0.44	-0.0
2,848,700	+		Pf1N1B4_2512	0.44	-1.5
2,848,700	+		Pf1N1B4_2512	0.44	-1.6
2,848,701	-		Pf1N1B4_2512	0.44	-0.0
2,848,701	-		Pf1N1B4_2512	0.44	-0.0
2,848,701	-		Pf1N1B4_2512	0.44	-0.5
2,848,701	-		Pf1N1B4_2512	0.44	-0.0
2,848,701	-		Pf1N1B4_2512	0.44	-0.0
2,849,005	+		Pf1N1B4_2512	0.52	-2.3
2,849,006	-		Pf1N1B4_2512	0.52	-0.0
2,849,006	-		Pf1N1B4_2512	0.52	-2.3
2,849,006	-		Pf1N1B4_2512	0.52	-2.4
2,849,348	+		Pf1N1B4_2512	0.62	-0.0
2,849,348	+		Pf1N1B4_2512	0.62	-0.0
2,849,349	-		Pf1N1B4_2512	0.62	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+				-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-1.0
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,778	+		Pf1N1B4_2512	0.73	-2.4
2,849,778	+		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.0
2,849,779	-		Pf1N1B4_2512	0.73	-0.6
2,849,779	-		Pf1N1B4_2512	0.73	-0.9
2,849,784	+		Pf1N1B4_2512	0.73	-0.0
2,849,784	+		Pf1N1B4_2512	0.73	-0.0
2,849,785	-		Pf1N1B4_2512	0.73	-0.0
2,849,785	-		Pf1N1B4_2512	0.73	-0.0
2,849,785	-		Pf1N1B4_2512	0.73	-0.0
2,849,785	-		Pf1N1B4_2512	0.73	-0.0
2,849,790	+		Pf1N1B4_2512	0.73	-0.0
2,849,790	+		Pf1N1B4_2512	0.73	-0.0
2,849,790	+		Pf1N1B4_2512	0.73	-0.0
2,849,791	-		Pf1N1B4_2512	0.73	-0.0
2,849,853	+		Pf1N1B4_2512	0.75	-1.9
2,849,854	-		Pf1N1B4_2512	0.75	-0.0
2,849,854	-		Pf1N1B4_2512	0.75	-0.0
2,849,854	-		Pf1N1B4_2512	0.75	-0.0
2,849,960	+		Pf1N1B4_2512	0.78	-4.7
2,849,976	+				-0.0
2,849,977	-		Pf1N1B4_2512	0.78	-1.8
2,849,977	-		Pf1N1B4_2512	0.78	-0.0
2,850,162	+		Pf1N1B4_2512	0.83	-0.0
2,850,162	+		Pf1N1B4_2512	0.83	-0.0
2,850,162	+		Pf1N1B4_2512	0.83	-1.3
2,850,162	+		Pf1N1B4_2512	0.83	-2.5
2,850,163	-		Pf1N1B4_2512	0.83	-2.6
2,850,219	-		Pf1N1B4_2512	0.85	+1.0
2,850,222	-		Pf1N1B4_2512	0.85	-0.0
2,850,222	-		Pf1N1B4_2512	0.85	-0.0
2,850,314	+		Pf1N1B4_2512	0.87	-0.0
2,850,314	+		Pf1N1B4_2512	0.87	-0.0
2,850,314	+		Pf1N1B4_2512	0.87	-0.0
2,850,315	-		Pf1N1B4_2512	0.87	-0.0
2,850,315	-		Pf1N1B4_2512	0.87	-0.0
2,850,330	+		Pf1N1B4_2512	0.88	-0.0
2,850,331	-		Pf1N1B4_2512	0.88	-0.0
2,850,361	-		Pf1N1B4_2512	0.89	-0.0
2,850,450	+				-0.0
2,850,450	+				-0.0
2,850,450	+				-0.0
2,850,450	+				-0.0
2,850,450	+				-0.0
2,850,450	+				-0.0
2,850,450	+				-2.3
2,850,450	+				-1.7
2,850,451	-				-0.0
2,850,451	-				-1.0
2,850,451	-				-0.0
2,850,475	+				-1.6
2,850,475	+				-0.0
2,850,475	+				-0.0
2,850,475	+				-0.0
2,850,475	+				-0.0
2,850,475	+				-0.0
2,850,475	+				-0.0
2,850,475	+				-0.0
2,850,475	+				-2.1
2,850,476	-				-1.6
2,850,476	-				-0.0
2,850,494	+				-0.8
2,850,494	+				-0.0
2,850,494	+				-0.0
2,850,494	+				-0.0
2,850,494	+				-0.0
2,850,494	+				-0.0
2,850,494	+				-0.0
2,850,697	+				-1.3
2,850,697	+				-2.5
2,850,697	+				-0.0
2,850,697	+				-0.0
2,850,698	-				-0.0
2,850,698	-				+2.0
2,850,698	-				-0.0
2,850,698	-				-0.0
2,850,762	+				-2.3
2,850,763	-				-0.0
2,850,763	-				-2.8
2,850,763	-				-0.0
2,850,763	-				-0.0
2,850,826	-				-3.2
2,850,826	-				-0.0
2,850,852	+				-0.0
2,850,852	+				-0.0
2,850,852	+				-2.4
2,850,853	-				-2.7
2,850,853	-				-1.3
2,850,853	-				-0.0
2,850,863	+				-0.0
2,850,863	+				-0.0
2,850,863	+				-0.0
2,850,863	+				-1.0
2,850,863	+				-2.5
2,850,863	+				-0.0
2,850,863	+				-0.0
2,850,864	-				-0.0
2,850,864	-				-3.3
2,850,873	-				-2.0