Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2406

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
2,725,068	+		Pf1N1B4_2405	0.57	-2.4
2,725,108	+		Pf1N1B4_2405	0.59	+0.0
2,725,109	-		Pf1N1B4_2405	0.59	-2.8
2,725,109	-		Pf1N1B4_2405	0.59	+0.0
2,725,147	+		Pf1N1B4_2405	0.61	+0.0
2,725,147	+		Pf1N1B4_2405	0.61	+0.0
2,725,148	-		Pf1N1B4_2405	0.61	+0.0
2,725,240	+		Pf1N1B4_2405	0.66	-3.0
2,725,240	+		Pf1N1B4_2405	0.66	+0.0
2,725,240	+		Pf1N1B4_2405	0.66	+0.0
2,725,241	-		Pf1N1B4_2405	0.66	-2.6
2,725,241	-		Pf1N1B4_2405	0.66	+0.0
2,725,241	-		Pf1N1B4_2405	0.66	+0.0
2,725,241	-		Pf1N1B4_2405	0.66	+0.0
2,725,393	+		Pf1N1B4_2405	0.73	-3.6
2,725,393	+		Pf1N1B4_2405	0.73	+0.0
2,725,393	+		Pf1N1B4_2405	0.73	-3.4
2,725,551	-		Pf1N1B4_2405	0.80	+0.0
2,725,585	-		Pf1N1B4_2405	0.82	-2.7
2,725,808	+				-2.7
2,725,808	+				+0.0
2,725,808	+				+0.0
2,725,843	+				-2.8
2,725,873	+				+0.0
2,725,873	+				+0.0
2,725,873	+				-1.9
2,725,874	-				+0.0
2,725,874	-				-3.5
2,725,874	-				+0.0
2,725,874	-				+0.0
2,725,874	-				-2.2
2,725,973	-				-2.5
2,725,973	-				-2.2
2,726,026	+				+0.0
2,726,026	+				+0.0
2,726,026	+				+0.0
2,726,026	+				-1.7
2,726,047	-				-2.3
2,726,047	-				-2.1
2,726,152	+		Pf1N1B4_2406	0.29	-1.8
2,726,152	+		Pf1N1B4_2406	0.29	+0.0
2,726,152	+		Pf1N1B4_2406	0.29	+0.0
2,726,152	+				+0.0
2,726,152	+		Pf1N1B4_2406	0.29	+0.0
2,726,153	-		Pf1N1B4_2406	0.29	+0.0
2,726,153	-		Pf1N1B4_2406	0.29	-0.4
2,726,158	+		Pf1N1B4_2406	0.30	+0.0
2,726,158	+		Pf1N1B4_2406	0.30	+0.0
2,726,158	+		Pf1N1B4_2406	0.30	+0.1
2,726,158	+		Pf1N1B4_2406	0.30	+0.0
2,726,158	+		Pf1N1B4_2406	0.30	+0.0
2,726,182	+		Pf1N1B4_2406	0.35	+0.0
2,726,183	-		Pf1N1B4_2406	0.35	+0.0
2,726,416	+		Pf1N1B4_2406	0.82	-1.3
2,726,416	+				-3.5
2,726,416	+		Pf1N1B4_2406	0.82	-1.0
2,726,416	+		Pf1N1B4_2406	0.82	+0.0
2,726,417	-		Pf1N1B4_2406	0.83	+0.0
2,726,468	+				-3.4
2,726,469	-				-3.6
2,726,469	-				+0.0
2,726,469	-				+0.0
2,726,469	-				-0.8
2,726,469	-				+1.0
2,726,469	-				-3.1
2,726,469	-				-2.0
2,726,476	+				+0.0
2,726,476	+				+0.0
2,726,476	+				-2.6
2,726,476	+				-2.2
2,726,477	-				+0.0
2,726,493	+				-2.9
2,726,500	+				-1.9
2,726,500	+				+0.0
2,726,500	+				+0.0
2,726,500	+				+0.0
2,726,500	+				+0.0
2,726,500	+				-1.8
2,726,500	+				-2.3
2,726,500	+				+0.0
2,726,500	+				-0.5
2,726,500	+				+0.0
2,726,501	-				-2.0
2,726,501	-				-2.8
2,726,501	-				-3.6
2,726,501	-				-2.3
2,726,586	+				+0.0
2,726,586	+				+0.0
2,726,586	+				+0.0
2,726,587	-				+0.0
2,726,589	+				+0.0
2,726,589	+				-1.8
2,726,589	+				+0.0
2,726,645	+		Pf1N1B4_2407	0.14	-1.0
2,726,645	+		Pf1N1B4_2407	0.14	+0.0
2,726,645	+		Pf1N1B4_2407	0.14	+0.0
2,726,645	+		Pf1N1B4_2407	0.14	-2.3
2,726,645	+		Pf1N1B4_2407	0.14	-3.6
2,726,646	-		Pf1N1B4_2407	0.14	+0.0
2,726,646	-		Pf1N1B4_2407	0.14	+0.0
2,726,655	-		Pf1N1B4_2407	0.18	+0.0
2,726,860	+		Pf1N1B4_2407	0.87	-2.4
2,726,860	+		Pf1N1B4_2407	0.87	+0.0
2,726,860	+		Pf1N1B4_2407	0.87	-4.0
2,726,861	-		Pf1N1B4_2407	0.87	+0.0
2,726,875	+				+0.0
2,726,884	-				+0.0
2,726,902	-				+0.0
2,727,024	+				+0.0
2,727,066	+				+0.0
2,727,103	-		Pf1N1B4_2408	0.18	-2.5
2,727,103	-		Pf1N1B4_2408	0.18	+0.0
2,727,106	-		Pf1N1B4_2408	0.18	+0.0
2,727,106	-		Pf1N1B4_2408	0.18	-2.3
2,727,136	-		Pf1N1B4_2408	0.25	+0.0
2,727,136	-		Pf1N1B4_2408	0.25	+0.0
2,727,136	-		Pf1N1B4_2408	0.25	+0.0
2,727,136	-		Pf1N1B4_2408	0.25	-2.1
2,727,136	-		Pf1N1B4_2408	0.25	+0.0
2,727,136	-		Pf1N1B4_2408	0.25	+0.0
2,727,188	+		Pf1N1B4_2408	0.36	-2.0
2,727,188	+		Pf1N1B4_2408	0.36	-3.8
2,727,189	-		Pf1N1B4_2408	0.37	-3.6
2,727,189	-		Pf1N1B4_2408	0.37	-2.0
2,727,189	-		Pf1N1B4_2408	0.37	-2.8
2,727,264	-		Pf1N1B4_2408	0.53	+0.0
2,727,264	-		Pf1N1B4_2408	0.53	+0.0
2,727,288	+				-1.8
2,727,288	+		Pf1N1B4_2408	0.58	-1.9
2,727,289	-		Pf1N1B4_2408	0.59	-2.7
2,727,289	-		Pf1N1B4_2408	0.59	-1.6
2,727,367	-		Pf1N1B4_2408	0.76	-2.6
2,727,420	+		Pf1N1B4_2408	0.88	+0.0
2,727,420	+		Pf1N1B4_2408	0.88	+0.0
2,727,420	+		Pf1N1B4_2408	0.88	+0.0
2,727,420	+		Pf1N1B4_2408	0.88	-1.2
2,727,420	+		Pf1N1B4_2408	0.88	-1.9
2,727,421	-		Pf1N1B4_2408	0.88	+0.0
2,727,421	-		Pf1N1B4_2408	0.88	+0.0
2,727,421	-		Pf1N1B4_2408	0.88	+0.0