Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2193

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
2,504,226	+		Pf1N1B4_2192	0.26	-0.7
2,504,226	+		Pf1N1B4_2192	0.26	-0.0
2,504,226	+		Pf1N1B4_2192	0.26	-0.0
2,504,226	+		Pf1N1B4_2192	0.26	-1.8
2,504,226	+		Pf1N1B4_2192	0.26	-1.4
2,504,226	+		Pf1N1B4_2192	0.26	-1.1
2,504,227	-		Pf1N1B4_2192	0.27	-4.0
2,504,227	-		Pf1N1B4_2192	0.27	-3.2
2,504,227	-		Pf1N1B4_2192	0.27	-4.0
2,504,290	+		Pf1N1B4_2192	0.32	-0.0
2,504,290	+		Pf1N1B4_2192	0.32	-0.0
2,504,290	+		Pf1N1B4_2192	0.32	-2.6
2,504,290	+		Pf1N1B4_2192	0.32	-0.0
2,504,290	+		Pf1N1B4_2192	0.32	-0.0
2,504,291	-		Pf1N1B4_2192	0.32	-0.0
2,504,291	-		Pf1N1B4_2192	0.32	-1.3
2,504,291	-		Pf1N1B4_2192	0.32	-4.1
2,504,291	-		Pf1N1B4_2192	0.32	-0.0
2,504,562	-		Pf1N1B4_2192	0.56	-0.0
2,504,720	+		Pf1N1B4_2192	0.70	-0.0
2,504,721	-		Pf1N1B4_2192	0.70	-0.0
2,504,721	-		Pf1N1B4_2192	0.70	-0.0
2,504,819	+		Pf1N1B4_2192	0.79	-0.0
2,504,819	+		Pf1N1B4_2192	0.79	-0.0
2,504,819	+		Pf1N1B4_2192	0.79	-2.2
2,504,819	+		Pf1N1B4_2192	0.79	-0.0
2,504,820	-		Pf1N1B4_2192	0.79	-1.6
2,504,820	-		Pf1N1B4_2192	0.79	-0.0
2,504,974	+				-2.0
2,505,057	+				-1.0
2,505,057	+				-3.1
2,505,057	+				-0.6
2,505,057	+				-1.7
2,505,058	-				-0.0
2,505,058	-				-3.3
2,505,058	-				-2.8
2,505,058	-				-0.0
2,505,058	-				-0.0
2,505,236	+		Pf1N1B4_2193	0.39	-0.0
2,505,237	-		Pf1N1B4_2193	0.39	-0.0
2,505,237	-		Pf1N1B4_2193	0.39	-0.0
2,505,237	-		Pf1N1B4_2193	0.39	-0.0
2,505,345	-		Pf1N1B4_2193	0.62	-0.0
2,505,382	+		Pf1N1B4_2193	0.70	-3.7
2,505,382	+		Pf1N1B4_2193	0.70	-0.0
2,505,383	-		Pf1N1B4_2193	0.70	-3.5
2,505,483	+				-0.0
2,505,483	+				-0.0
2,505,483	+				-2.1
2,505,483	+				-0.0
2,505,483	+				-0.0
2,505,483	+				-0.0
2,505,483	+				-2.7
2,505,483	+				-0.0
2,505,483	+				-0.0
2,505,483	+				-0.0
2,505,483	+				-3.5
2,505,483	+				-0.0
2,505,483	+				-0.0
2,505,484	-				-0.0
2,505,484	-				-0.0
2,505,484	-				-0.0
2,505,484	-				-4.0
2,505,520	+				-0.0
2,505,520	+				-3.9
2,505,520	+				-0.0
2,505,520	+				-0.0
2,505,520	+				-2.8
2,505,520	+				-0.0
2,505,520	+				-0.0
2,505,520	+				-2.4
2,505,520	+				-2.1
2,505,520	+				-0.0
2,505,520	+				-0.0
2,505,520	+				-0.2
2,505,520	+				-0.9
2,505,521	-				-1.9
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-0.0
2,505,521	-				-2.8
2,505,521	-				-0.0
2,505,521	-				-1.8
2,505,521	-				-0.0
2,505,526	+				-3.0
2,505,526	+				-0.0
2,505,526	+				-0.0
2,505,554	+				-1.3
2,505,570	+				-0.0
2,505,570	+				-0.0
2,505,596	+				-2.8
2,505,596	+				-0.0
2,505,597	-				-1.2
2,505,621	-				-4.6
2,505,817	+		Pf1N1B4_2194	0.13	-2.7
2,505,818	-		Pf1N1B4_2194	0.13	-0.0
2,505,818	-		Pf1N1B4_2194	0.13	-0.0
2,506,010	+		Pf1N1B4_2194	0.23	-1.9
2,506,010	+		Pf1N1B4_2194	0.23	-0.0
2,506,011	-		Pf1N1B4_2194	0.23	-0.0
2,506,011	-		Pf1N1B4_2194	0.23	-0.0
2,506,011	-		Pf1N1B4_2194	0.23	-0.0
2,506,147	-		Pf1N1B4_2194	0.30	-0.0
2,506,147	-				-1.9
2,506,217	+		Pf1N1B4_2194	0.34	-0.0
2,506,249	+		Pf1N1B4_2194	0.35	-0.0
2,506,315	+		Pf1N1B4_2194	0.39	-2.9
2,506,315	+		Pf1N1B4_2194	0.39	-0.0
2,506,354	+		Pf1N1B4_2194	0.41	-0.0
2,506,354	+		Pf1N1B4_2194	0.41	-1.2
2,506,354	+		Pf1N1B4_2194	0.41	-0.0
2,506,354	+		Pf1N1B4_2194	0.41	-2.2
2,506,355	-		Pf1N1B4_2194	0.41	-0.0
2,506,355	-		Pf1N1B4_2194	0.41	-0.0
2,506,355	-		Pf1N1B4_2194	0.41	-0.0
2,506,355	-		Pf1N1B4_2194	0.41	-0.0