Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1857

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
2,127,411	+		Pf1N1B4_1854	0.86	-0.0
2,127,411	+		Pf1N1B4_1854	0.86	-3.9
2,127,411	+		Pf1N1B4_1854	0.86	-2.3
2,127,411	+		Pf1N1B4_1854	0.86	-1.9
2,127,412	-		Pf1N1B4_1854	0.87	-0.0
2,127,412	-		Pf1N1B4_1854	0.87	-0.0
2,127,642	+		Pf1N1B4_1855	0.13	-2.7
2,127,642	+		Pf1N1B4_1855	0.13	-0.0
2,127,642	+		Pf1N1B4_1855	0.13	-1.7
2,127,642	+		Pf1N1B4_1855	0.13	-2.9
2,127,642	+		Pf1N1B4_1855	0.13	-0.0
2,127,642	+		Pf1N1B4_1855	0.13	-0.0
2,127,642	+		Pf1N1B4_1855	0.13	-0.0
2,127,700	+		Pf1N1B4_1855	0.55	-2.7
2,127,700	+		Pf1N1B4_1855	0.55	-0.0
2,127,700	+		Pf1N1B4_1855	0.55	-1.4
2,127,700	+		Pf1N1B4_1855	0.55	-3.1
2,127,700	+		Pf1N1B4_1855	0.55	-2.3
2,127,700	+		Pf1N1B4_1855	0.55	-1.3
2,127,701	-		Pf1N1B4_1855	0.55	-2.3
2,127,701	-		Pf1N1B4_1855	0.55	-2.6
2,127,849	+		Pf1N1B4_1856	0.17	-0.0
2,127,849	+		Pf1N1B4_1856	0.17	-3.1
2,127,849	+		Pf1N1B4_1856	0.17	-1.9
2,127,849	+		Pf1N1B4_1856	0.17	-2.9
2,127,850	-		Pf1N1B4_1856	0.17	-2.0
2,127,850	-		Pf1N1B4_1856	0.17	-0.0
2,127,850	-		Pf1N1B4_1856	0.17	-0.0
2,127,850	-		Pf1N1B4_1856	0.17	-2.0
2,127,850	-		Pf1N1B4_1856	0.17	-0.0
2,127,900	+		Pf1N1B4_1856	0.26	-0.0
2,127,900	+		Pf1N1B4_1856	0.26	-0.0
2,127,900	+		Pf1N1B4_1856	0.26	-0.0
2,127,901	-		Pf1N1B4_1856	0.26	-0.0
2,127,987	+				-0.0
2,127,987	+		Pf1N1B4_1856	0.41	-0.0
2,128,119	+		Pf1N1B4_1856	0.65	-2.7
2,128,119	+		Pf1N1B4_1856	0.65	-0.0
2,128,120	-		Pf1N1B4_1856	0.65	-0.0
2,128,248	+		Pf1N1B4_1856	0.88	-0.0
2,128,248	+		Pf1N1B4_1856	0.88	-2.8
2,128,318	+				-4.7
2,128,344	+				-0.0
2,128,344	+				-0.0
2,128,344	+				-0.0
2,128,344	+				-2.6
2,128,344	+				-2.2
2,128,344	+				-0.0
2,128,344	+				-0.0
2,128,344	+				-0.0
2,128,344	+				-4.8
2,128,344	+				-0.0
2,128,344	+				-0.0
2,128,344	+				-3.0
2,128,345	-				-0.0
2,128,345	-				-0.0
2,128,345	-				-2.5
2,128,345	-				-3.3
2,128,345	-				+1.0
2,128,345	-				-1.9
2,128,345	-				-0.0
2,128,345	-				-0.0
2,128,365	+				-0.0
2,128,365	+				-0.0
2,128,365	+				-0.0
2,128,365	+				-1.0
2,128,366	-				-2.7
2,128,366	-				-0.0
2,128,366	-				-0.0
2,128,366	-				-4.0
2,128,366	-				-0.0
2,128,366	-				-2.3
2,128,366	-				-2.6
2,128,368	+				-3.4
2,128,368	+				-0.0
2,128,368	+				-0.0
2,128,368	+				-1.5
2,128,368	+				-0.0
2,128,368	+				-0.0
2,128,368	+				-0.0
2,128,369	-				-0.0
2,128,369	-				-0.0
2,128,369	-				-0.0
2,128,369	-				-0.0
2,128,369	-				-3.0
2,128,369	-				-3.0
2,128,521	+		Pf1N1B4_1857	0.20	-2.7
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-5.7
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-0.0
2,128,521	+		Pf1N1B4_1857	0.20	-2.5
2,128,522	-		Pf1N1B4_1857	0.20	-1.7
2,128,522	-		Pf1N1B4_1857	0.20	-1.0
2,128,522	-				-0.0
2,128,575	+		Pf1N1B4_1857	0.26	-0.0
2,128,575	+		Pf1N1B4_1857	0.26	-0.0
2,128,575	+		Pf1N1B4_1857	0.26	-0.0
2,128,575	+		Pf1N1B4_1857	0.26	-0.0
2,128,575	+		Pf1N1B4_1857	0.26	-2.3
2,128,575	+		Pf1N1B4_1857	0.26	-1.9
2,128,576	-		Pf1N1B4_1857	0.26	-0.0
2,128,576	-		Pf1N1B4_1857	0.26	-0.0
2,128,576	-		Pf1N1B4_1857	0.26	-0.0
2,128,671	+		Pf1N1B4_1857	0.36	-0.0
2,128,671	+		Pf1N1B4_1857	0.36	-2.3
2,128,672	-		Pf1N1B4_1857	0.37	-0.6
2,128,672	-		Pf1N1B4_1857	0.37	-0.0
2,128,672	-		Pf1N1B4_1857	0.37	-0.0
2,128,983	+		Pf1N1B4_1857	0.72	-0.0
2,128,995	+		Pf1N1B4_1857	0.73	-3.1
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-1.9
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-2.0
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-2.5
2,129,031	+		Pf1N1B4_1857	0.77	-3.3
2,129,031	+		Pf1N1B4_1857	0.77	-3.7
2,129,031	+		Pf1N1B4_1857	0.77	-2.4
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-3.2
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-2.6
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,031	+		Pf1N1B4_1857	0.77	-0.0
2,129,032	-		Pf1N1B4_1857	0.77	-0.0
2,129,032	-		Pf1N1B4_1857	0.77	-2.4
2,129,032	-		Pf1N1B4_1857	0.77	-0.0
2,129,032	-		Pf1N1B4_1857	0.77	-2.0
2,129,032	-		Pf1N1B4_1857	0.77	-0.0
2,129,032	-		Pf1N1B4_1857	0.77	-2.4
2,129,032	-		Pf1N1B4_1857	0.77	-0.0
2,129,032	-		Pf1N1B4_1857	0.77	-0.0
2,129,032	-		Pf1N1B4_1857	0.77	-2.6
2,129,032	-		Pf1N1B4_1857	0.77	-1.7
2,129,032	-		Pf1N1B4_1857	0.77	-0.0
2,129,032	-				-0.0
2,129,078	-		Pf1N1B4_1857	0.82	-0.0
2,129,078	-		Pf1N1B4_1857	0.82	-0.0
2,129,223	+				-0.0
2,129,223	+				-2.9
2,129,223	+				-2.3
2,129,223	+				-0.0
2,129,223	+				-4.2
2,129,223	+				-0.0
2,129,223	+				-0.0
2,129,223	+				-3.7
2,129,224	-				-2.9
2,129,224	-				-0.0
2,129,224	-				-0.0
2,129,224	-				-0.0
2,129,224	-				-0.0
2,129,252	+				-3.7
2,129,252	+				-3.8
2,129,253	-				-0.0
2,129,253	-				-1.6
2,129,253	-				-0.0
2,129,253	-				-0.0
2,129,488	+				-0.0
2,129,488	+				-3.9
2,129,488	+				-1.8
2,129,489	-				-0.0
2,129,489	-				-0.0
2,129,489	-				-0.0
2,129,489	-				-2.3
2,129,489	-				-1.6
2,129,490	+				-5.3
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-2.7
2,129,490	+				-0.0
2,129,490	+				-2.1
2,129,490	+				-0.0
2,129,490	+				-4.0
2,129,490	+				-2.2
2,129,490	+				-0.0
2,129,490	+				-2.3
2,129,490	+				-0.0
2,129,490	+				-1.5
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-3.5
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-2.9
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-2.1
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-2.7
2,129,490	+				-0.0
2,129,490	+				-2.3
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,490	+				-3.4
2,129,490	+				-0.0
2,129,490	+				-0.0
2,129,491	-				-2.0
2,129,491	-				-2.7
2,129,491	-				-0.0
2,129,491	-				-1.4
2,129,491	-				-3.2
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-2.1
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-0.4
2,129,491	-				-1.7
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-2.1
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-0.0
2,129,491	-				-2.8
2,129,491	-				-1.4
2,129,494	+				-2.1
2,129,647	+		Pf1N1B4_1859	0.17	-0.0
2,129,648	-		Pf1N1B4_1859	0.17	-0.0
2,129,648	-				-0.0
2,129,648	-		Pf1N1B4_1859	0.17	-1.6
2,129,938	+		Pf1N1B4_1859	0.56	-0.0
2,129,938	+		Pf1N1B4_1859	0.56	-0.0
2,129,938	+		Pf1N1B4_1859	0.56	-4.1
2,129,938	+		Pf1N1B4_1859	0.56	-3.9
2,129,938	+		Pf1N1B4_1859	0.56	-0.0
2,129,938	+		Pf1N1B4_1859	0.56	-0.0
2,129,938	+		Pf1N1B4_1859	0.56	-3.3
2,129,938	+		Pf1N1B4_1859	0.56	-0.0
2,129,939	-		Pf1N1B4_1859	0.56	-0.0
2,129,939	-		Pf1N1B4_1859	0.56	-0.0
2,129,939	-		Pf1N1B4_1859	0.56	-0.0
2,129,939	-		Pf1N1B4_1859	0.56	-3.4
2,129,939	-		Pf1N1B4_1859	0.56	-0.0
2,129,939	-		Pf1N1B4_1859	0.56	-0.0
2,129,939	-		Pf1N1B4_1859	0.56	-0.0
2,129,939	-		Pf1N1B4_1859	0.56	-1.5
2,130,069	-		Pf1N1B4_1859	0.74	-0.0
2,130,094	+		Pf1N1B4_1859	0.77	-0.0
2,130,095	-		Pf1N1B4_1859	0.77	-0.0
2,130,145	+		Pf1N1B4_1859	0.84	-2.9
2,130,145	+		Pf1N1B4_1859	0.84	-0.0
2,130,145	+		Pf1N1B4_1859	0.84	-0.0
2,130,145	+		Pf1N1B4_1859	0.84	-0.0
2,130,145	+		Pf1N1B4_1859	0.84	-0.0
2,130,146	-		Pf1N1B4_1859	0.84	-0.0
2,130,190	+		Pf1N1B4_1859	0.90	-0.0
2,130,190	+		Pf1N1B4_1859	0.90	-5.3
2,130,190	+		Pf1N1B4_1859	0.90	-2.4
2,130,190	+		Pf1N1B4_1859	0.90	-3.6
2,130,190	+		Pf1N1B4_1859	0.90	-2.7
2,130,190	+		Pf1N1B4_1859	0.90	-0.0
2,130,191	-				+2.0
2,130,191	-				-3.3
2,130,196	+				-4.6
2,130,196	+				-0.0
2,130,196	+				-2.8
2,130,196	+				-0.0
2,130,196	+				-0.0
2,130,196	+				-5.1
2,130,196	+				-0.0
2,130,197	-				-2.5
2,130,197	-				-2.9
2,130,197	-				-0.0
2,130,228	+				-0.0
2,130,229	-				-2.4
2,130,229	-				-0.0
2,130,229	-				-0.0