Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1818

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
2,095,188	+		Pf1N1B4_1817	0.48	-0.0
2,095,189	-		Pf1N1B4_1817	0.48	-0.0
2,095,189	-		Pf1N1B4_1817	0.48	-2.2
2,095,189	-		Pf1N1B4_1817	0.48	-0.0
2,095,270	+		Pf1N1B4_1817	0.57	-0.0
2,095,344	+		Pf1N1B4_1817	0.66	-0.0
2,095,344	+		Pf1N1B4_1817	0.66	-0.0
2,095,344	+		Pf1N1B4_1817	0.66	-0.0
2,095,345	-		Pf1N1B4_1817	0.66	-0.0
2,095,417	+		Pf1N1B4_1817	0.74	-0.0
2,095,417	+		Pf1N1B4_1817	0.74	-1.9
2,095,417	+		Pf1N1B4_1817	0.74	-2.1
2,095,417	+		Pf1N1B4_1817	0.74	-0.0
2,095,417	+		Pf1N1B4_1817	0.74	-2.1
2,095,417	+		Pf1N1B4_1817	0.74	-2.0
2,095,417	+		Pf1N1B4_1817	0.74	-0.0
2,095,417	+		Pf1N1B4_1817	0.74	-2.7
2,095,417	+		Pf1N1B4_1817	0.74	-0.0
2,095,417	+		Pf1N1B4_1817	0.74	-0.0
2,095,418	-		Pf1N1B4_1817	0.74	-0.0
2,095,418	-		Pf1N1B4_1817	0.74	-2.6
2,095,418	-		Pf1N1B4_1817	0.74	-0.0
2,095,496	-		Pf1N1B4_1817	0.83	-0.0
2,095,496	-		Pf1N1B4_1817	0.83	-1.9
2,095,496	-		Pf1N1B4_1817	0.83	-2.5
2,095,535	-		Pf1N1B4_1817	0.87	-0.0
2,095,544	+		Pf1N1B4_1817	0.88	-2.4
2,095,551	+		Pf1N1B4_1817	0.89	-0.0
2,095,551	+		Pf1N1B4_1817	0.89	-3.8
2,095,552	-		Pf1N1B4_1817	0.89	-0.0
2,095,552	-		Pf1N1B4_1817	0.89	-3.2
2,095,554	+		Pf1N1B4_1817	0.89	-1.8
2,095,554	+		Pf1N1B4_1817	0.89	-1.2
2,095,554	+		Pf1N1B4_1817	0.89	-0.0
2,095,554	+		Pf1N1B4_1817	0.89	-2.2
2,095,554	+		Pf1N1B4_1817	0.89	-1.5
2,095,554	+		Pf1N1B4_1817	0.89	-0.0
2,095,554	+		Pf1N1B4_1817	0.89	-0.0
2,095,555	-		Pf1N1B4_1817	0.89	-0.0
2,095,555	-		Pf1N1B4_1817	0.89	-2.1
2,095,555	-		Pf1N1B4_1817	0.89	-0.0
2,095,594	+				-0.0
2,095,594	+				-0.8
2,095,594	+				-0.0
2,095,595	-				-0.0
2,095,635	+				-0.0
2,095,635	+				-1.0
2,095,636	-				-0.0
2,095,642	+				-2.7
2,095,642	+				-0.0
2,095,642	+				-2.8
2,095,642	+				-2.7
2,095,642	+				-0.0
2,095,643	-				-0.0
2,095,643	-				-0.0
2,095,643	-				-0.0
2,095,664	+				-0.0
2,095,664	+				-0.0
2,095,664	+				-0.0
2,095,665	-				-0.0
2,095,665	-				-0.0
2,095,665	-				-0.0
2,095,665	-				-2.3
2,095,665	-				-2.6
2,095,668	-				-0.0
2,095,706	+				-0.2
2,095,706	+				-2.9
2,095,706	+				-2.7
2,095,706	+				-0.0
2,095,706	+				-0.0
2,095,706	+				-1.0
2,095,706	+				-1.6
2,095,707	-				-1.2
2,095,708	+				-0.0
2,095,708	+				-0.0
2,095,708	+				-1.7
2,095,708	+				-0.0
2,095,708	+				-3.3
2,095,708	+				-0.0
2,095,708	+				-0.0
2,095,708	+				-0.0
2,095,708	+				-0.0
2,095,708	+				-0.0
2,095,709	-				-1.9
2,095,709	-				-3.4
2,095,709	-				-0.0
2,095,709	-				-0.0
2,095,709	-				-3.8
2,095,709	-				-2.0
2,095,709	-				-0.0
2,095,709	-				-0.0
2,095,709	-				-2.4
2,095,709	-				-0.0
2,095,712	+				-2.2
2,095,712	+				-0.0
2,095,712	+				-0.0
2,095,712	+				-0.0
2,095,713	-				-0.0
2,095,713	-				-0.0
2,095,713	-				-0.0
2,095,713	-				-0.0
2,095,713	-				-0.0
2,095,713	-				-0.0
2,095,713	-				-0.0
2,095,746	+				-0.0
2,095,746	+				-1.6
2,095,746	+				-0.0
2,095,747	-				-0.0
2,095,747	-				-0.0
2,095,747	-				-0.0
2,095,747	-				-0.0
2,095,760	+				-1.9
2,095,760	+				-2.0
2,095,760	+				-2.3
2,095,761	-				-0.0
2,095,761	-				-0.0
2,095,761	-				-0.0
2,095,761	-				-0.0
2,095,761	-				-0.0
2,095,774	+				-0.0
2,095,774	+				-0.0
2,095,774	+				-0.0
2,095,774	+				-1.0
2,095,774	+				-0.0
2,095,775	-				-3.6
2,095,775	-				-2.3
2,095,775	-				-2.2
2,095,775	-				-0.0
2,095,775	-				-3.1
2,095,832	+				-1.0
2,095,833	-				-0.0
2,095,923	+				-0.0
2,095,924	-				-0.0
2,095,924	-				-0.0
2,095,947	+				-1.6
2,096,002	+				-1.6
2,096,057	+				-0.0
2,096,057	+				-0.0
2,096,058	-				-3.1
2,096,064	+				-0.0
2,096,064	+				-2.6
2,096,065	-				-0.0
2,096,065	-				-0.0
2,096,179	+				-0.0
2,096,179	+				-0.0
2,096,179	+				-0.0
2,096,180	-				-0.0
2,096,234	+		Pf1N1B4_1818	0.13	-3.6
2,096,234	+		Pf1N1B4_1818	0.13	-2.7
2,096,234	+		Pf1N1B4_1818	0.13	-2.4
2,096,234	+		Pf1N1B4_1818	0.13	-0.0
2,096,235	-		Pf1N1B4_1818	0.13	-0.0
2,096,335	-		Pf1N1B4_1818	0.22	-0.0
2,096,499	-				-0.0
2,096,499	-				-0.0
2,096,501	-		Pf1N1B4_1818	0.37	-3.3
2,096,525	+		Pf1N1B4_1818	0.39	-4.0
2,096,525	+		Pf1N1B4_1818	0.39	-0.0
2,096,525	+		Pf1N1B4_1818	0.39	-3.1
2,096,526	-		Pf1N1B4_1818	0.39	-0.0
2,096,528	+		Pf1N1B4_1818	0.39	-0.0
2,096,730	-		Pf1N1B4_1818	0.57	-6.4
2,096,857	+		Pf1N1B4_1818	0.69	-6.1
2,096,857	+		Pf1N1B4_1818	0.69	-3.3
2,096,858	-		Pf1N1B4_1818	0.69	-1.6
2,096,860	+		Pf1N1B4_1818	0.69	-4.1
2,096,860	+		Pf1N1B4_1818	0.69	-3.9
2,096,860	+		Pf1N1B4_1818	0.69	-0.0
2,096,860	+		Pf1N1B4_1818	0.69	-0.0
2,096,861	-		Pf1N1B4_1818	0.69	-0.0
2,096,861	-		Pf1N1B4_1818	0.69	-4.5
2,096,861	-		Pf1N1B4_1818	0.69	-3.6
2,096,896	-		Pf1N1B4_1818	0.72	-0.0
2,097,074	+		Pf1N1B4_1818	0.88	-3.7
2,097,206	+				-2.3
2,097,207	-				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-0.0
2,097,235	+				-5.7
2,097,235	+				-0.0
2,097,235	+				-4.2
2,097,235	+				-3.7
2,097,236	-				-0.0
2,097,236	-				-0.0
2,097,236	-				-0.0
2,097,236	-				-2.5
2,097,236	-				-4.1
2,097,236	-				-0.0
2,097,236	-				-3.6
2,097,236	-				-0.0
2,097,236	-				-0.0
2,097,236	-				-0.0
2,097,251	+				-0.0
2,097,251	+				-3.6
2,097,251	+				-0.0
2,097,251	+				-0.0
2,097,251	+				-0.0
2,097,251	+				-3.9
2,097,251	+				-0.0
2,097,251	+				-3.9
2,097,251	+				-3.8
2,097,252	-				-0.0
2,097,252	-				-0.0
2,097,252	-				-0.0
2,097,252	-				-2.9
2,097,252	-				-0.0
2,097,252	-				-5.9
2,097,281	+		Pf1N1B4_1819	0.18	-3.7
2,097,281	+		Pf1N1B4_1819	0.18	-0.0
2,097,281	+		Pf1N1B4_1819	0.18	-0.0
2,097,281	+		Pf1N1B4_1819	0.18	-0.0
2,097,282	-		Pf1N1B4_1819	0.18	-0.0
2,097,282	-		Pf1N1B4_1819	0.18	-0.0
2,097,310	+		Pf1N1B4_1819	0.27	-3.6
2,097,310	+		Pf1N1B4_1819	0.27	-0.0
2,097,311	-		Pf1N1B4_1819	0.27	-4.5
2,097,311	-		Pf1N1B4_1819	0.27	-0.0
2,097,574	+				-4.9
2,097,575	-				-0.0
2,097,653	-				-0.0
2,097,688	-				-5.8
2,097,703	+		Pf1N1B4_1820	0.11	-3.6
2,097,703	+		Pf1N1B4_1820	0.11	-2.9
2,097,703	+		Pf1N1B4_1820	0.11	-0.0
2,097,703	+		Pf1N1B4_1820	0.11	-4.7
2,097,703	+		Pf1N1B4_1820	0.11	-0.0
2,097,703	+		Pf1N1B4_1820	0.11	-4.3
2,097,703	+		Pf1N1B4_1820	0.11	-0.0
2,097,703	+		Pf1N1B4_1820	0.11	-0.0
2,097,703	+		Pf1N1B4_1820	0.11	-0.0
2,097,704	-		Pf1N1B4_1820	0.11	-0.0
2,097,704	-		Pf1N1B4_1820	0.11	-1.7
2,097,704	-		Pf1N1B4_1820	0.11	-3.9
2,097,704	-		Pf1N1B4_1820	0.11	-0.0
2,097,704	-		Pf1N1B4_1820	0.11	-0.0
2,097,704	-		Pf1N1B4_1820	0.11	-0.0
2,097,704	-		Pf1N1B4_1820	0.11	-5.6
2,097,704	-		Pf1N1B4_1820	0.11	-3.7
2,097,704	-		Pf1N1B4_1820	0.11	-0.0
2,097,704	-		Pf1N1B4_1820	0.11	-3.9
2,097,704	-		Pf1N1B4_1820	0.11	-0.0
2,097,704	-		Pf1N1B4_1820	0.11	-0.0
2,097,705	+		Pf1N1B4_1820	0.11	-4.0
2,097,705	+		Pf1N1B4_1820	0.11	-3.9
2,097,705	+		Pf1N1B4_1820	0.11	-2.9
2,097,705	+		Pf1N1B4_1820	0.11	-4.4
2,097,706	-		Pf1N1B4_1820	0.11	-0.0
2,097,706	-		Pf1N1B4_1820	0.11	-0.0
2,097,706	-		Pf1N1B4_1820	0.11	-5.9
2,097,727	-		Pf1N1B4_1820	0.13	-4.6
2,097,743	-		Pf1N1B4_1820	0.14	-0.0
2,097,743	-		Pf1N1B4_1820	0.14	-0.0
2,097,752	+		Pf1N1B4_1820	0.14	-0.0
2,097,752	+		Pf1N1B4_1820	0.14	-0.0
2,097,752	+		Pf1N1B4_1820	0.14	-0.0
2,097,752	+		Pf1N1B4_1820	0.14	-2.8
2,097,752	+				-0.0
2,097,752	+		Pf1N1B4_1820	0.14	-3.2
2,097,752	+		Pf1N1B4_1820	0.14	-0.0
2,097,752	+		Pf1N1B4_1820	0.14	-3.4
2,097,752	+		Pf1N1B4_1820	0.14	-2.8
2,097,752	+		Pf1N1B4_1820	0.14	-4.9
2,097,753	-		Pf1N1B4_1820	0.14	-1.8
2,097,753	-		Pf1N1B4_1820	0.14	-4.5
2,097,853	-		Pf1N1B4_1820	0.21	-0.0
2,098,030	+		Pf1N1B4_1820	0.34	-0.0
2,098,030	+		Pf1N1B4_1820	0.34	-0.0
2,098,030	+		Pf1N1B4_1820	0.34	-4.2
2,098,030	+		Pf1N1B4_1820	0.34	-0.0
2,098,031	-		Pf1N1B4_1820	0.34	-5.4
2,098,031	-		Pf1N1B4_1820	0.34	-0.0
2,098,031	-		Pf1N1B4_1820	0.34	-3.4
2,098,031	-		Pf1N1B4_1820	0.34	-0.0
2,098,031	-				-3.1
2,098,061	+		Pf1N1B4_1820	0.36	-4.5
2,098,062	-		Pf1N1B4_1820	0.36	-0.0
2,098,148	+		Pf1N1B4_1820	0.42	-0.0
2,098,148	+		Pf1N1B4_1820	0.42	-0.0
2,098,148	+		Pf1N1B4_1820	0.42	-0.0
2,098,149	-		Pf1N1B4_1820	0.42	-0.0
2,098,149	-		Pf1N1B4_1820	0.42	-0.0