Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1748

Experiment: Nitrate reduction, replicate C t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C t2
1,999,145	+		Pf1N1B4_1746	0.55	-1.8
1,999,154	+		Pf1N1B4_1746	0.56	-0.0
1,999,154	+		Pf1N1B4_1746	0.56	-0.0
1,999,155	-		Pf1N1B4_1746	0.56	-0.0
1,999,254	+		Pf1N1B4_1746	0.63	-0.0
1,999,255	-		Pf1N1B4_1746	0.63	-0.0
1,999,255	-		Pf1N1B4_1746	0.63	-3.6
1,999,255	-		Pf1N1B4_1746	0.63	-3.7
1,999,255	-		Pf1N1B4_1746	0.63	-0.0
1,999,256	+		Pf1N1B4_1746	0.63	-0.0
1,999,360	+		Pf1N1B4_1746	0.70	-2.4
1,999,481	+		Pf1N1B4_1746	0.78	-0.0
1,999,481	+		Pf1N1B4_1746	0.78	-0.0
1,999,481	+		Pf1N1B4_1746	0.78	-0.0
1,999,481	+		Pf1N1B4_1746	0.78	-0.0
1,999,482	-		Pf1N1B4_1746	0.78	-2.2
1,999,639	+		Pf1N1B4_1746	0.89	-2.5
1,999,639	+		Pf1N1B4_1746	0.89	-0.0
1,999,639	+		Pf1N1B4_1746	0.89	-0.0
1,999,640	-		Pf1N1B4_1746	0.89	-0.0
1,999,640	-		Pf1N1B4_1746	0.89	-0.0
1,999,640	-		Pf1N1B4_1746	0.89	-0.0
1,999,640	-		Pf1N1B4_1746	0.89	-1.8
1,999,767	-				-0.0
1,999,813	+				-0.0
1,999,814	-				-0.0
1,999,816	+				-0.0
1,999,816	+				-2.2
1,999,817	-				-0.0
1,999,833	+				-0.0
1,999,833	+				-2.1
1,999,834	-				-0.0
1,999,834	-				-3.1
1,999,834	-				-1.0
1,999,844	+				-5.0
1,999,986	+				-0.0
2,000,129	+				-0.0
2,000,129	+				-0.0
2,000,130	-				-0.0
2,000,187	+		Pf1N1B4_1748	0.10	-4.2
2,000,187	+		Pf1N1B4_1748	0.10	-0.0
2,000,187	+		Pf1N1B4_1748	0.10	-0.0
2,000,187	+		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-				-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-0.0
2,000,188	-		Pf1N1B4_1748	0.10	-3.6
2,000,189	+		Pf1N1B4_1748	0.11	-0.0
2,000,189	+		Pf1N1B4_1748	0.11	-2.7
2,000,189	+		Pf1N1B4_1748	0.11	-0.0
2,000,189	+		Pf1N1B4_1748	0.11	-0.0
2,000,190	-		Pf1N1B4_1748	0.11	-0.0
2,000,457	-		Pf1N1B4_1748	0.53	-0.0
2,000,472	-		Pf1N1B4_1748	0.55	-0.0
2,000,578	+		Pf1N1B4_1748	0.72	-0.0
2,000,579	-		Pf1N1B4_1748	0.72	-0.0
2,000,645	-		Pf1N1B4_1748	0.82	-0.0
2,000,690	+		Pf1N1B4_1748	0.89	-0.0
2,000,690	+		Pf1N1B4_1748	0.89	-3.7
2,000,690	+		Pf1N1B4_1748	0.89	-1.0
2,000,691	-		Pf1N1B4_1748	0.89	-0.0
2,000,691	-		Pf1N1B4_1748	0.89	-0.0
2,000,691	-		Pf1N1B4_1748	0.89	-0.0
2,000,691	-		Pf1N1B4_1748	0.89	-0.0
2,000,691	-		Pf1N1B4_1748	0.89	-0.0
2,000,691	-		Pf1N1B4_1748	0.89	-2.0
2,000,758	+				-0.0
2,000,758	+				-0.0
2,000,759	-				-0.0
2,000,761	+				-2.3
2,000,761	+				-0.0
2,000,761	+				-0.0
2,000,761	+				-0.0
2,000,762	-				-0.0
2,000,762	-				-2.9
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-1.3
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,762	-				-0.0
2,000,828	+				-3.8
2,000,828	+				-0.0
2,000,828	+				-0.0
2,000,828	+				-3.2
2,000,829	-				-0.0
2,000,829	-				-0.0
2,000,920	+				-0.0
2,000,920	+				+0.3
2,000,920	+				-0.0
2,000,921	-				-0.0
2,000,921	-				-3.3
2,000,921	-				-0.0
2,000,921	-				-1.2
2,000,942	+				-1.4
2,000,942	+				-0.0
2,000,942	+				-0.0
2,000,943	-				-0.0
2,000,943	-				-3.3
2,000,943	-				-0.0
2,000,953	+				-2.2
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.8
2,000,953	+				-3.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-1.2
2,000,953	+				-2.6
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-0.0
2,000,953	+				-2.5
2,000,953	+				-0.0
2,000,953	+				-1.2
2,000,954	-				-1.7
2,000,954	-				-0.0
2,000,954	-				-3.0
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-2.2
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-2.8
2,000,954	-				-0.0
2,000,954	-				-2.4
2,000,954	-				-2.7
2,000,954	-				-0.0
2,000,954	-				-4.9
2,000,954	-				-0.0
2,000,954	-				-0.0
2,000,954	-				-2.5
2,000,954	-				-0.0
2,000,955	+				-2.5
2,000,955	+				-0.0
2,000,955	+				-0.0
2,000,956	-				-0.0
2,000,956	-				-0.0
2,000,956	-				-2.7
2,000,957	+				-1.6
2,000,957	+				-1.0
2,000,957	+				-1.4
2,000,957	+				-0.0
2,000,957	+				-0.0
2,000,957	+				-0.0
2,000,957	+				-2.8
2,000,958	-				-0.0
2,000,958	-				-1.6
2,000,958	-				-0.0
2,000,958	-				-4.8
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-2.8
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,958	-				-0.0
2,000,968	+				-0.0
2,000,969	-				-0.0
2,000,969	-				-0.0
2,000,972	+				-4.9
2,001,161	-		Pf1N1B4_1749	0.61	-3.1
2,001,161	-		Pf1N1B4_1749	0.61	-3.4
2,001,161	-		Pf1N1B4_1749	0.61	-0.0
2,001,161	-				-3.0
2,001,257	-				-0.0
2,001,257	-				-2.6
2,001,257	-				-0.0
2,001,257	-				-0.0
2,001,257	-				-0.0
2,001,257	-				-0.0
2,001,258	+				-0.0
2,001,258	+				-0.0
2,001,258	+				-2.5
2,001,258	+				-0.0
2,001,258	+				-0.6
2,001,259	-				-0.0
2,001,259	-				-2.9
2,001,259	-				-1.8
2,001,272	+				-3.0
2,001,272	+				-0.0
2,001,273	-				-0.0
2,001,273	-				-0.0
2,001,273	-				-0.0
2,001,444	-		Pf1N1B4_1750	0.63	-0.0
2,001,516	+		Pf1N1B4_1750	0.89	-0.5
2,001,517	-				-2.3
2,001,517	-		Pf1N1B4_1750	0.89	-0.0
2,001,552	-				-2.4
2,001,720	+		Pf1N1B4_1751	0.69	-0.0
2,001,721	-		Pf1N1B4_1751	0.70	-1.9