Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05160 and PGA1_c05170 overlap by 11 nucleotides PGA1_c05170 and PGA1_c05180 are separated by 156 nucleotides PGA1_c05180 and PGA1_c05190 overlap by 1 nucleotides PGA1_c05190 and PGA1_c05200 are separated by 14 nucleotides PGA1_c05200 and PGA1_c05210 overlap by 1 nucleotides
PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938
_c05160
PGA1_c05170: PGA1_c05170 - penicillinase repressor blaI/mecI-like protein, at 511,928 to 512,323
_c05170
PGA1_c05180: PGA1_c05180 - Predicted small integral membrane protein, at 512,480 to 512,758
_c05180
PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555
_c05190
PGA1_c05200: PGA1_c05200 - putative ABC transporter, inner membrane component, at 513,570 to 514,433
_c05200
PGA1_c05210: PGA1_c05210 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 514,433 to 515,548
_c05210
Position (kb) 512
513
514 Strain fitness (log2 ratio) -2
-1
0
1
2 at 511.772 kb on - strand, within PGA1_c05160 at 511.822 kb on - strand, within PGA1_c05160 at 511.897 kb on + strand at 511.913 kb on - strand at 512.040 kb on + strand, within PGA1_c05170 at 512.040 kb on + strand, within PGA1_c05170 at 512.042 kb on + strand, within PGA1_c05170 at 512.071 kb on - strand, within PGA1_c05170 at 512.099 kb on - strand, within PGA1_c05170 at 512.104 kb on - strand, within PGA1_c05170 at 512.104 kb on - strand, within PGA1_c05170 at 512.280 kb on + strand, within PGA1_c05170 at 512.292 kb on + strand at 512.306 kb on + strand at 512.332 kb on + strand at 512.340 kb on - strand at 512.354 kb on - strand at 512.354 kb on - strand at 512.355 kb on - strand at 512.355 kb on - strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.365 kb on - strand at 512.365 kb on - strand at 512.365 kb on - strand at 512.367 kb on - strand at 512.400 kb on + strand at 512.400 kb on + strand at 512.408 kb on - strand at 512.420 kb on + strand at 512.430 kb on + strand at 512.430 kb on + strand at 512.443 kb on - strand at 512.457 kb on - strand at 512.467 kb on + strand at 512.554 kb on + strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.591 kb on - strand, within PGA1_c05180 at 512.648 kb on - strand, within PGA1_c05180 at 512.725 kb on - strand, within PGA1_c05180 at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.736 kb on + strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.865 kb on + strand, within PGA1_c05190 at 512.873 kb on - strand, within PGA1_c05190 at 512.901 kb on - strand, within PGA1_c05190 at 512.936 kb on + strand, within PGA1_c05190 at 512.944 kb on - strand, within PGA1_c05190 at 512.944 kb on - strand, within PGA1_c05190 at 512.963 kb on - strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 513.002 kb on + strand, within PGA1_c05190 at 513.002 kb on + strand, within PGA1_c05190 at 513.010 kb on - strand, within PGA1_c05190 at 513.046 kb on + strand, within PGA1_c05190 at 513.054 kb on - strand, within PGA1_c05190 at 513.054 kb on - strand, within PGA1_c05190 at 513.068 kb on + strand, within PGA1_c05190 at 513.121 kb on - strand, within PGA1_c05190 at 513.166 kb on - strand, within PGA1_c05190 at 513.170 kb on + strand, within PGA1_c05190 at 513.172 kb on + strand, within PGA1_c05190 at 513.178 kb on - strand, within PGA1_c05190 at 513.239 kb on + strand, within PGA1_c05190 at 513.249 kb on + strand, within PGA1_c05190 at 513.291 kb on - strand, within PGA1_c05190 at 513.315 kb on + strand, within PGA1_c05190 at 513.315 kb on + strand, within PGA1_c05190 at 513.402 kb on - strand, within PGA1_c05190 at 513.420 kb on + strand, within PGA1_c05190 at 513.428 kb on - strand, within PGA1_c05190 at 513.428 kb on - strand, within PGA1_c05190 at 513.527 kb on - strand at 513.565 kb on - strand at 513.575 kb on - strand at 513.598 kb on + strand at 513.598 kb on + strand at 513.598 kb on + strand at 513.606 kb on + strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.646 kb on - strand at 513.685 kb on - strand, within PGA1_c05200 at 513.721 kb on - strand, within PGA1_c05200 at 513.746 kb on + strand, within PGA1_c05200 at 513.760 kb on + strand, within PGA1_c05200 at 513.805 kb on + strand, within PGA1_c05200 at 513.822 kb on - strand, within PGA1_c05200 at 513.840 kb on + strand, within PGA1_c05200 at 513.850 kb on + strand, within PGA1_c05200 at 513.851 kb on - strand, within PGA1_c05200 at 513.913 kb on - strand, within PGA1_c05200 at 513.916 kb on + strand, within PGA1_c05200 at 513.979 kb on - strand, within PGA1_c05200 at 513.992 kb on + strand, within PGA1_c05200 at 513.998 kb on + strand, within PGA1_c05200 at 514.054 kb on + strand, within PGA1_c05200 at 514.057 kb on - strand, within PGA1_c05200 at 514.064 kb on + strand, within PGA1_c05200 at 514.064 kb on + strand, within PGA1_c05200 at 514.064 kb on + strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.127 kb on + strand, within PGA1_c05200 at 514.135 kb on - strand, within PGA1_c05200 at 514.218 kb on + strand, within PGA1_c05200 at 514.218 kb on + strand, within PGA1_c05200 at 514.237 kb on - strand, within PGA1_c05200 at 514.246 kb on + strand, within PGA1_c05200 at 514.274 kb on + strand, within PGA1_c05200 at 514.279 kb on + strand, within PGA1_c05200 at 514.282 kb on - strand, within PGA1_c05200 at 514.284 kb on + strand, within PGA1_c05200 at 514.284 kb on + strand, within PGA1_c05200 at 514.292 kb on - strand, within PGA1_c05200 at 514.292 kb on - strand, within PGA1_c05200 at 514.333 kb on + strand, within PGA1_c05200 at 514.341 kb on - strand, within PGA1_c05200 at 514.397 kb on + strand at 514.404 kb on + strand at 514.405 kb on - strand at 514.449 kb on + strand at 514.455 kb on + strand at 514.463 kb on - strand at 514.544 kb on - strand at 514.548 kb on + strand, within PGA1_c05210 at 514.548 kb on + strand, within PGA1_c05210 at 514.548 kb on + strand, within PGA1_c05210 at 514.548 kb on - strand, within PGA1_c05210 at 514.554 kb on + strand, within PGA1_c05210 at 514.554 kb on + strand, within PGA1_c05210
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 511,772 - PGA1_c05160 0.86 +0.6 511,822 - PGA1_c05160 0.90 -0.6 511,897 + -1.4 511,913 - -0.3 512,040 + PGA1_c05170 0.28 -0.6 512,040 + PGA1_c05170 0.28 +0.5 512,042 + PGA1_c05170 0.29 -0.0 512,071 - PGA1_c05170 0.36 +0.8 512,099 - PGA1_c05170 0.43 -0.0 512,104 - PGA1_c05170 0.44 -0.7 512,104 - PGA1_c05170 0.44 +0.4 512,280 + PGA1_c05170 0.89 +0.0 512,292 + +0.4 512,306 + -1.5 512,332 + +1.2 512,340 - +0.1 512,354 - -2.2 512,354 - -2.0 512,355 - +0.6 512,355 - -0.8 512,357 + +1.0 512,357 + +0.7 512,357 + +1.8 512,357 + -0.2 512,357 + +0.5 512,357 + +1.0 512,357 + +0.5 512,357 + +1.1 512,365 - -0.4 512,365 - +0.0 512,365 - +0.4 512,367 - -1.1 512,400 + +0.2 512,400 + +1.1 512,408 - -0.1 512,420 + +1.2 512,430 + -0.6 512,430 + +0.1 512,443 - +0.5 512,457 - -0.7 512,467 + +0.2 512,554 + PGA1_c05180 0.27 +0.7 512,562 - PGA1_c05180 0.29 +0.9 512,562 - PGA1_c05180 0.29 +0.2 512,562 - PGA1_c05180 0.29 +0.1 512,591 - PGA1_c05180 0.40 +2.1 512,648 - PGA1_c05180 0.60 +1.2 512,725 - PGA1_c05180 0.88 +0.3 512,735 + -0.3 512,735 + -1.0 512,735 + +0.5 512,735 + -1.4 512,735 + -0.4 512,735 + +1.1 512,735 + +1.3 512,735 + +1.2 512,735 + +0.4 512,735 + +0.4 512,736 + -0.2 512,743 - +0.6 512,743 - +0.0 512,743 - -0.8 512,743 - +0.1 512,743 - +1.5 512,743 - +0.5 512,743 - +0.3 512,755 + +1.3 512,755 + +0.5 512,755 + +0.2 512,755 + +0.2 512,755 + +0.3 512,865 + PGA1_c05190 0.13 +0.4 512,873 - PGA1_c05190 0.14 +0.6 512,901 - PGA1_c05190 0.18 +1.0 512,936 + PGA1_c05190 0.22 +0.0 512,944 - PGA1_c05190 0.23 +0.8 512,944 - PGA1_c05190 0.23 +0.4 512,963 - PGA1_c05190 0.26 +0.0 512,997 + PGA1_c05190 0.30 +0.0 512,997 + PGA1_c05190 0.30 -0.5 512,997 + PGA1_c05190 0.30 +0.6 513,002 + PGA1_c05190 0.31 +1.2 513,002 + PGA1_c05190 0.31 -0.1 513,010 - PGA1_c05190 0.32 +1.7 513,046 + PGA1_c05190 0.36 -0.3 513,054 - PGA1_c05190 0.37 +0.7 513,054 - PGA1_c05190 0.37 +1.7 513,068 + PGA1_c05190 0.39 +0.7 513,121 - PGA1_c05190 0.45 +0.3 513,166 - PGA1_c05190 0.51 +0.4 513,170 + PGA1_c05190 0.52 +0.5 513,172 + PGA1_c05190 0.52 +0.4 513,178 - PGA1_c05190 0.53 +0.8 513,239 + PGA1_c05190 0.60 +0.3 513,249 + PGA1_c05190 0.62 +0.9 513,291 - PGA1_c05190 0.67 +0.6 513,315 + PGA1_c05190 0.70 +0.7 513,315 + PGA1_c05190 0.70 -0.2 513,402 - PGA1_c05190 0.81 +0.4 513,420 + PGA1_c05190 0.83 +0.4 513,428 - PGA1_c05190 0.84 -0.7 513,428 - PGA1_c05190 0.84 +0.6 513,527 - +0.4 513,565 - +1.1 513,575 - +0.3 513,598 + +0.4 513,598 + -0.4 513,598 + +0.0 513,606 + +0.7 513,606 - -0.8 513,606 - +0.3 513,606 - +0.8 513,606 - -0.1 513,606 - +0.4 513,606 - +1.8 513,646 - +0.0 513,685 - PGA1_c05200 0.13 +1.6 513,721 - PGA1_c05200 0.17 +0.5 513,746 + PGA1_c05200 0.20 -0.2 513,760 + PGA1_c05200 0.22 +1.6 513,805 + PGA1_c05200 0.27 -1.0 513,822 - PGA1_c05200 0.29 +0.6 513,840 + PGA1_c05200 0.31 -0.4 513,850 + PGA1_c05200 0.32 +1.9 513,851 - PGA1_c05200 0.33 -0.3 513,913 - PGA1_c05200 0.40 +0.8 513,916 + PGA1_c05200 0.40 +1.0 513,979 - PGA1_c05200 0.47 +1.4 513,992 + PGA1_c05200 0.49 +0.4 513,998 + PGA1_c05200 0.50 -0.6 514,054 + PGA1_c05200 0.56 +1.9 514,057 - PGA1_c05200 0.56 +0.6 514,064 + PGA1_c05200 0.57 +0.7 514,064 + PGA1_c05200 0.57 +0.5 514,064 + PGA1_c05200 0.57 +0.9 514,072 - PGA1_c05200 0.58 +0.3 514,072 - PGA1_c05200 0.58 +0.8 514,072 - PGA1_c05200 0.58 +0.8 514,072 - PGA1_c05200 0.58 +1.5 514,127 + PGA1_c05200 0.64 -0.1 514,135 - PGA1_c05200 0.65 +0.8 514,218 + PGA1_c05200 0.75 +0.7 514,218 + PGA1_c05200 0.75 +0.3 514,237 - PGA1_c05200 0.77 +0.8 514,246 + PGA1_c05200 0.78 +0.6 514,274 + PGA1_c05200 0.81 -0.1 514,279 + PGA1_c05200 0.82 -0.2 514,282 - PGA1_c05200 0.82 +0.5 514,284 + PGA1_c05200 0.83 +1.4 514,284 + PGA1_c05200 0.83 -0.3 514,292 - PGA1_c05200 0.84 +1.7 514,292 - PGA1_c05200 0.84 +1.0 514,333 + PGA1_c05200 0.88 +0.7 514,341 - PGA1_c05200 0.89 +0.3 514,397 + -0.8 514,404 + +0.7 514,405 - +1.0 514,449 + -0.4 514,455 + +0.5 514,463 - -0.1 514,544 - +0.1 514,548 + PGA1_c05210 0.10 -0.9 514,548 + PGA1_c05210 0.10 +0.2 514,548 + PGA1_c05210 0.10 +0.1 514,548 - PGA1_c05210 0.10 +0.0 514,554 + PGA1_c05210 0.11 +2.0 514,554 + PGA1_c05210 0.11 +1.4
Or see this region's nucleotide sequence