Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10610

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10600 and PGA1_c10610 overlap by 4 nucleotidesPGA1_c10610 and PGA1_c10620 are separated by 38 nucleotides PGA1_c10600: PGA1_c10600 - hypothetical protein, at 1,097,824 to 1,098,789 _c10600 PGA1_c10610: PGA1_c10610 - hypothetical protein, at 1,098,786 to 1,099,532 _c10610 PGA1_c10620: PGA1_c10620 - peptide chain release factor 3, at 1,099,571 to 1,101,178 _c10620 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -1 0 1at 1097.859 kb on - strandat 1097.869 kb on - strandat 1097.898 kb on + strandat 1097.966 kb on - strand, within PGA1_c10600at 1097.966 kb on - strand, within PGA1_c10600at 1098.061 kb on + strand, within PGA1_c10600at 1098.099 kb on + strand, within PGA1_c10600at 1098.173 kb on + strand, within PGA1_c10600at 1098.173 kb on + strand, within PGA1_c10600at 1098.201 kb on + strand, within PGA1_c10600at 1098.248 kb on - strand, within PGA1_c10600at 1098.293 kb on + strand, within PGA1_c10600at 1098.293 kb on + strand, within PGA1_c10600at 1098.293 kb on + strand, within PGA1_c10600at 1098.293 kb on + strand, within PGA1_c10600at 1098.298 kb on + strand, within PGA1_c10600at 1098.301 kb on - strand, within PGA1_c10600at 1098.301 kb on - strand, within PGA1_c10600at 1098.328 kb on - strand, within PGA1_c10600at 1098.328 kb on - strand, within PGA1_c10600at 1098.329 kb on + strand, within PGA1_c10600at 1098.335 kb on + strand, within PGA1_c10600at 1098.335 kb on + strand, within PGA1_c10600at 1098.353 kb on + strand, within PGA1_c10600at 1098.436 kb on + strand, within PGA1_c10600at 1098.436 kb on + strand, within PGA1_c10600at 1098.436 kb on + strand, within PGA1_c10600at 1098.439 kb on - strand, within PGA1_c10600at 1098.451 kb on + strand, within PGA1_c10600at 1098.456 kb on + strand, within PGA1_c10600at 1098.503 kb on + strand, within PGA1_c10600at 1098.572 kb on + strand, within PGA1_c10600at 1098.572 kb on + strand, within PGA1_c10600at 1098.572 kb on + strand, within PGA1_c10600at 1098.572 kb on + strand, within PGA1_c10600at 1098.572 kb on + strand, within PGA1_c10600at 1098.575 kb on - strand, within PGA1_c10600at 1098.580 kb on - strand, within PGA1_c10600at 1098.580 kb on - strand, within PGA1_c10600at 1098.580 kb on - strand, within PGA1_c10600at 1098.580 kb on - strand, within PGA1_c10600at 1098.580 kb on - strand, within PGA1_c10600at 1098.637 kb on - strand, within PGA1_c10600at 1098.670 kb on + strand, within PGA1_c10600at 1098.671 kb on - strand, within PGA1_c10600at 1098.675 kb on + strand, within PGA1_c10600at 1098.675 kb on + strand, within PGA1_c10600at 1098.676 kb on - strand, within PGA1_c10600at 1098.683 kb on - strand, within PGA1_c10600at 1098.704 kb on - strandat 1098.739 kb on + strandat 1098.765 kb on + strandat 1098.795 kb on + strandat 1098.923 kb on + strand, within PGA1_c10610at 1098.931 kb on - strand, within PGA1_c10610at 1098.931 kb on - strand, within PGA1_c10610at 1098.943 kb on + strand, within PGA1_c10610at 1099.008 kb on + strand, within PGA1_c10610at 1099.008 kb on + strand, within PGA1_c10610at 1099.008 kb on + strand, within PGA1_c10610at 1099.016 kb on - strand, within PGA1_c10610at 1099.059 kb on - strand, within PGA1_c10610at 1099.091 kb on - strand, within PGA1_c10610at 1099.170 kb on - strand, within PGA1_c10610at 1099.191 kb on + strand, within PGA1_c10610at 1099.199 kb on + strand, within PGA1_c10610at 1099.199 kb on - strand, within PGA1_c10610at 1099.351 kb on + strand, within PGA1_c10610at 1099.439 kb on - strand, within PGA1_c10610at 1099.545 kb on - strandat 1099.545 kb on - strandat 1099.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,097,859 - -0.0
1,097,869 - +1.3
1,097,898 + -0.8
1,097,966 - PGA1_c10600 0.15 +0.3
1,097,966 - PGA1_c10600 0.15 -0.1
1,098,061 + PGA1_c10600 0.25 -0.8
1,098,099 + PGA1_c10600 0.28 -0.1
1,098,173 + PGA1_c10600 0.36 -0.7
1,098,173 + PGA1_c10600 0.36 +0.3
1,098,201 + PGA1_c10600 0.39 +0.7
1,098,248 - PGA1_c10600 0.44 -0.3
1,098,293 + PGA1_c10600 0.49 +0.3
1,098,293 + PGA1_c10600 0.49 -0.5
1,098,293 + PGA1_c10600 0.49 -1.0
1,098,293 + PGA1_c10600 0.49 -1.4
1,098,298 + PGA1_c10600 0.49 +0.1
1,098,301 - PGA1_c10600 0.49 +0.5
1,098,301 - PGA1_c10600 0.49 -0.3
1,098,328 - PGA1_c10600 0.52 -0.2
1,098,328 - PGA1_c10600 0.52 -0.4
1,098,329 + PGA1_c10600 0.52 +0.2
1,098,335 + PGA1_c10600 0.53 -0.4
1,098,335 + PGA1_c10600 0.53 +0.1
1,098,353 + PGA1_c10600 0.55 -0.8
1,098,436 + PGA1_c10600 0.63 +0.2
1,098,436 + PGA1_c10600 0.63 +0.3
1,098,436 + PGA1_c10600 0.63 +0.1
1,098,439 - PGA1_c10600 0.64 -0.6
1,098,451 + PGA1_c10600 0.65 +0.8
1,098,456 + PGA1_c10600 0.65 +0.6
1,098,503 + PGA1_c10600 0.70 -0.1
1,098,572 + PGA1_c10600 0.77 +0.1
1,098,572 + PGA1_c10600 0.77 -0.2
1,098,572 + PGA1_c10600 0.77 +1.1
1,098,572 + PGA1_c10600 0.77 -0.8
1,098,572 + PGA1_c10600 0.77 +0.4
1,098,575 - PGA1_c10600 0.78 +0.0
1,098,580 - PGA1_c10600 0.78 +0.3
1,098,580 - PGA1_c10600 0.78 +0.5
1,098,580 - PGA1_c10600 0.78 +0.8
1,098,580 - PGA1_c10600 0.78 +0.2
1,098,580 - PGA1_c10600 0.78 -0.7
1,098,637 - PGA1_c10600 0.84 +0.7
1,098,670 + PGA1_c10600 0.88 -0.7
1,098,671 - PGA1_c10600 0.88 +1.2
1,098,675 + PGA1_c10600 0.88 -0.3
1,098,675 + PGA1_c10600 0.88 -0.5
1,098,676 - PGA1_c10600 0.88 +1.1
1,098,683 - PGA1_c10600 0.89 +0.4
1,098,704 - +0.6
1,098,739 + +0.7
1,098,765 + -1.3
1,098,795 + -0.3
1,098,923 + PGA1_c10610 0.18 +0.2
1,098,931 - PGA1_c10610 0.19 +1.5
1,098,931 - PGA1_c10610 0.19 +0.3
1,098,943 + PGA1_c10610 0.21 -0.7
1,099,008 + PGA1_c10610 0.30 +1.5
1,099,008 + PGA1_c10610 0.30 +0.4
1,099,008 + PGA1_c10610 0.30 +0.3
1,099,016 - PGA1_c10610 0.31 +0.5
1,099,059 - PGA1_c10610 0.37 +0.5
1,099,091 - PGA1_c10610 0.41 +1.1
1,099,170 - PGA1_c10610 0.51 +0.9
1,099,191 + PGA1_c10610 0.54 -0.7
1,099,199 + PGA1_c10610 0.55 -0.3
1,099,199 - PGA1_c10610 0.55 +1.5
1,099,351 + PGA1_c10610 0.76 +0.3
1,099,439 - PGA1_c10610 0.87 +1.2
1,099,545 - +0.3
1,099,545 - +1.3
1,099,593 - -1.7

Or see this region's nucleotide sequence