Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10600 and PGA1_c10610 overlap by 4 nucleotides PGA1_c10610 and PGA1_c10620 are separated by 38 nucleotides
PGA1_c10600: PGA1_c10600 - hypothetical protein, at 1,097,824 to 1,098,789
_c10600
PGA1_c10610: PGA1_c10610 - hypothetical protein, at 1,098,786 to 1,099,532
_c10610
PGA1_c10620: PGA1_c10620 - peptide chain release factor 3, at 1,099,571 to 1,101,178
_c10620
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-1
0
1 at 1097.859 kb on - strand at 1097.869 kb on - strand at 1097.898 kb on + strand at 1097.966 kb on - strand, within PGA1_c10600 at 1097.966 kb on - strand, within PGA1_c10600 at 1098.061 kb on + strand, within PGA1_c10600 at 1098.099 kb on + strand, within PGA1_c10600 at 1098.173 kb on + strand, within PGA1_c10600 at 1098.173 kb on + strand, within PGA1_c10600 at 1098.201 kb on + strand, within PGA1_c10600 at 1098.248 kb on - strand, within PGA1_c10600 at 1098.293 kb on + strand, within PGA1_c10600 at 1098.293 kb on + strand, within PGA1_c10600 at 1098.293 kb on + strand, within PGA1_c10600 at 1098.293 kb on + strand, within PGA1_c10600 at 1098.298 kb on + strand, within PGA1_c10600 at 1098.301 kb on - strand, within PGA1_c10600 at 1098.301 kb on - strand, within PGA1_c10600 at 1098.328 kb on - strand, within PGA1_c10600 at 1098.328 kb on - strand, within PGA1_c10600 at 1098.329 kb on + strand, within PGA1_c10600 at 1098.335 kb on + strand, within PGA1_c10600 at 1098.335 kb on + strand, within PGA1_c10600 at 1098.353 kb on + strand, within PGA1_c10600 at 1098.436 kb on + strand, within PGA1_c10600 at 1098.436 kb on + strand, within PGA1_c10600 at 1098.436 kb on + strand, within PGA1_c10600 at 1098.439 kb on - strand, within PGA1_c10600 at 1098.451 kb on + strand, within PGA1_c10600 at 1098.456 kb on + strand, within PGA1_c10600 at 1098.503 kb on + strand, within PGA1_c10600 at 1098.572 kb on + strand, within PGA1_c10600 at 1098.572 kb on + strand, within PGA1_c10600 at 1098.572 kb on + strand, within PGA1_c10600 at 1098.572 kb on + strand, within PGA1_c10600 at 1098.572 kb on + strand, within PGA1_c10600 at 1098.575 kb on - strand, within PGA1_c10600 at 1098.580 kb on - strand, within PGA1_c10600 at 1098.580 kb on - strand, within PGA1_c10600 at 1098.580 kb on - strand, within PGA1_c10600 at 1098.580 kb on - strand, within PGA1_c10600 at 1098.580 kb on - strand, within PGA1_c10600 at 1098.637 kb on - strand, within PGA1_c10600 at 1098.670 kb on + strand, within PGA1_c10600 at 1098.671 kb on - strand, within PGA1_c10600 at 1098.675 kb on + strand, within PGA1_c10600 at 1098.675 kb on + strand, within PGA1_c10600 at 1098.676 kb on - strand, within PGA1_c10600 at 1098.683 kb on - strand, within PGA1_c10600 at 1098.704 kb on - strand at 1098.739 kb on + strand at 1098.765 kb on + strand at 1098.795 kb on + strand at 1098.923 kb on + strand, within PGA1_c10610 at 1098.931 kb on - strand, within PGA1_c10610 at 1098.931 kb on - strand, within PGA1_c10610 at 1098.943 kb on + strand, within PGA1_c10610 at 1099.008 kb on + strand, within PGA1_c10610 at 1099.008 kb on + strand, within PGA1_c10610 at 1099.008 kb on + strand, within PGA1_c10610 at 1099.016 kb on - strand, within PGA1_c10610 at 1099.059 kb on - strand, within PGA1_c10610 at 1099.091 kb on - strand, within PGA1_c10610 at 1099.170 kb on - strand, within PGA1_c10610 at 1099.191 kb on + strand, within PGA1_c10610 at 1099.199 kb on + strand, within PGA1_c10610 at 1099.199 kb on - strand, within PGA1_c10610 at 1099.351 kb on + strand, within PGA1_c10610 at 1099.439 kb on - strand, within PGA1_c10610 at 1099.545 kb on - strand at 1099.545 kb on - strand at 1099.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,097,859 - -0.0 1,097,869 - +1.3 1,097,898 + -0.8 1,097,966 - PGA1_c10600 0.15 +0.3 1,097,966 - PGA1_c10600 0.15 -0.1 1,098,061 + PGA1_c10600 0.25 -0.8 1,098,099 + PGA1_c10600 0.28 -0.1 1,098,173 + PGA1_c10600 0.36 -0.7 1,098,173 + PGA1_c10600 0.36 +0.3 1,098,201 + PGA1_c10600 0.39 +0.7 1,098,248 - PGA1_c10600 0.44 -0.3 1,098,293 + PGA1_c10600 0.49 +0.3 1,098,293 + PGA1_c10600 0.49 -0.5 1,098,293 + PGA1_c10600 0.49 -1.0 1,098,293 + PGA1_c10600 0.49 -1.4 1,098,298 + PGA1_c10600 0.49 +0.1 1,098,301 - PGA1_c10600 0.49 +0.5 1,098,301 - PGA1_c10600 0.49 -0.3 1,098,328 - PGA1_c10600 0.52 -0.2 1,098,328 - PGA1_c10600 0.52 -0.4 1,098,329 + PGA1_c10600 0.52 +0.2 1,098,335 + PGA1_c10600 0.53 -0.4 1,098,335 + PGA1_c10600 0.53 +0.1 1,098,353 + PGA1_c10600 0.55 -0.8 1,098,436 + PGA1_c10600 0.63 +0.2 1,098,436 + PGA1_c10600 0.63 +0.3 1,098,436 + PGA1_c10600 0.63 +0.1 1,098,439 - PGA1_c10600 0.64 -0.6 1,098,451 + PGA1_c10600 0.65 +0.8 1,098,456 + PGA1_c10600 0.65 +0.6 1,098,503 + PGA1_c10600 0.70 -0.1 1,098,572 + PGA1_c10600 0.77 +0.1 1,098,572 + PGA1_c10600 0.77 -0.2 1,098,572 + PGA1_c10600 0.77 +1.1 1,098,572 + PGA1_c10600 0.77 -0.8 1,098,572 + PGA1_c10600 0.77 +0.4 1,098,575 - PGA1_c10600 0.78 +0.0 1,098,580 - PGA1_c10600 0.78 +0.3 1,098,580 - PGA1_c10600 0.78 +0.5 1,098,580 - PGA1_c10600 0.78 +0.8 1,098,580 - PGA1_c10600 0.78 +0.2 1,098,580 - PGA1_c10600 0.78 -0.7 1,098,637 - PGA1_c10600 0.84 +0.7 1,098,670 + PGA1_c10600 0.88 -0.7 1,098,671 - PGA1_c10600 0.88 +1.2 1,098,675 + PGA1_c10600 0.88 -0.3 1,098,675 + PGA1_c10600 0.88 -0.5 1,098,676 - PGA1_c10600 0.88 +1.1 1,098,683 - PGA1_c10600 0.89 +0.4 1,098,704 - +0.6 1,098,739 + +0.7 1,098,765 + -1.3 1,098,795 + -0.3 1,098,923 + PGA1_c10610 0.18 +0.2 1,098,931 - PGA1_c10610 0.19 +1.5 1,098,931 - PGA1_c10610 0.19 +0.3 1,098,943 + PGA1_c10610 0.21 -0.7 1,099,008 + PGA1_c10610 0.30 +1.5 1,099,008 + PGA1_c10610 0.30 +0.4 1,099,008 + PGA1_c10610 0.30 +0.3 1,099,016 - PGA1_c10610 0.31 +0.5 1,099,059 - PGA1_c10610 0.37 +0.5 1,099,091 - PGA1_c10610 0.41 +1.1 1,099,170 - PGA1_c10610 0.51 +0.9 1,099,191 + PGA1_c10610 0.54 -0.7 1,099,199 + PGA1_c10610 0.55 -0.3 1,099,199 - PGA1_c10610 0.55 +1.5 1,099,351 + PGA1_c10610 0.76 +0.3 1,099,439 - PGA1_c10610 0.87 +1.2 1,099,545 - +0.3 1,099,545 - +1.3 1,099,593 - -1.7
Or see this region's nucleotide sequence