Experiment: MoLS4 with L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0406 and rlpA are separated by 168 nucleotides rlpA and DVU0408 are separated by 90 nucleotides DVU0408 and DVU0409 are separated by 222 nucleotides DVU0409 and DVU0410 are separated by 5 nucleotides
DVU0406: DVU0406 - membrane protein, putative (TIGR), at 454,663 to 455,601
DVU0406
DVU0407: rlpA - rare lipoprotein A family protein (TIGR), at 455,770 to 456,414
rlpA
DVU0408: DVU0408 - response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR), at 456,505 to 458,652
DVU0408
DVU0409: DVU0409 - hypothetical protein (TIGR), at 458,875 to 459,225
DVU0409
DVU0410: DVU0410 - hypothetical protein (TIGR), at 459,231 to 459,836
DVU0410
Position (kb) 456
457
458
459 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 455.570 kb on + strand at 455.578 kb on - strand at 455.578 kb on - strand at 455.697 kb on - strand at 455.967 kb on + strand, within rlpA at 455.975 kb on + strand, within rlpA at 456.125 kb on + strand, within rlpA at 456.134 kb on - strand, within rlpA at 456.154 kb on + strand, within rlpA at 456.165 kb on - strand, within rlpA at 456.572 kb on - strand at 456.575 kb on + strand at 456.575 kb on + strand at 456.583 kb on - strand at 456.625 kb on + strand at 456.625 kb on + strand at 456.633 kb on - strand at 456.633 kb on - strand at 456.636 kb on + strand at 456.703 kb on - strand at 456.703 kb on - strand at 456.724 kb on - strand, within DVU0408 at 456.808 kb on - strand, within DVU0408 at 456.854 kb on - strand, within DVU0408 at 456.865 kb on + strand, within DVU0408 at 456.895 kb on + strand, within DVU0408 at 456.902 kb on + strand, within DVU0408 at 456.941 kb on + strand, within DVU0408 at 457.109 kb on - strand, within DVU0408 at 457.150 kb on + strand, within DVU0408 at 457.176 kb on + strand, within DVU0408 at 457.229 kb on - strand, within DVU0408 at 457.253 kb on + strand, within DVU0408 at 457.258 kb on + strand, within DVU0408 at 457.260 kb on - strand, within DVU0408 at 457.266 kb on - strand, within DVU0408 at 457.283 kb on - strand, within DVU0408 at 457.505 kb on - strand, within DVU0408 at 457.561 kb on - strand, within DVU0408 at 457.578 kb on + strand, within DVU0408 at 457.578 kb on + strand, within DVU0408 at 457.586 kb on - strand, within DVU0408 at 457.593 kb on - strand, within DVU0408 at 457.640 kb on - strand, within DVU0408 at 457.640 kb on - strand, within DVU0408 at 457.700 kb on + strand, within DVU0408 at 457.704 kb on + strand, within DVU0408 at 457.723 kb on + strand, within DVU0408 at 457.765 kb on + strand, within DVU0408 at 457.934 kb on - strand, within DVU0408 at 457.962 kb on + strand, within DVU0408 at 457.962 kb on + strand, within DVU0408 at 457.970 kb on - strand, within DVU0408 at 458.196 kb on + strand, within DVU0408 at 458.237 kb on + strand, within DVU0408 at 458.252 kb on + strand, within DVU0408 at 458.316 kb on + strand, within DVU0408 at 458.381 kb on + strand, within DVU0408 at 458.383 kb on + strand, within DVU0408 at 458.441 kb on - strand at 458.567 kb on + strand at 458.575 kb on - strand at 458.713 kb on + strand at 458.779 kb on - strand at 458.792 kb on + strand at 458.792 kb on + strand at 458.839 kb on + strand at 458.886 kb on + strand at 458.894 kb on - strand at 458.906 kb on + strand at 458.914 kb on - strand, within DVU0409 at 458.994 kb on - strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.202 kb on - strand at 459.448 kb on + strand, within DVU0410 at 459.448 kb on + strand, within DVU0410 at 459.482 kb on - strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.562 kb on + strand, within DVU0410 at 459.577 kb on + strand, within DVU0410 at 459.580 kb on - strand, within DVU0410 at 459.585 kb on - strand, within DVU0410
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N) remove 455,570 + -1.1 455,578 - -0.7 455,578 - +0.2 455,697 - -0.0 455,967 + rlpA DVU0407 0.31 +0.9 455,975 + rlpA DVU0407 0.32 -0.7 456,125 + rlpA DVU0407 0.55 -0.9 456,134 - rlpA DVU0407 0.56 +0.0 456,154 + rlpA DVU0407 0.60 -1.0 456,165 - rlpA DVU0407 0.61 -1.3 456,572 - -0.6 456,575 + -0.7 456,575 + -0.3 456,583 - -2.7 456,625 + -1.0 456,625 + -1.8 456,633 - -1.0 456,633 - -0.2 456,636 + -2.0 456,703 - -0.6 456,703 - -0.8 456,724 - DVU0408 0.10 +0.3 456,808 - DVU0408 0.14 -1.2 456,854 - DVU0408 0.16 +1.0 456,865 + DVU0408 0.17 -0.5 456,895 + DVU0408 0.18 -0.6 456,902 + DVU0408 0.18 -1.2 456,941 + DVU0408 0.20 -0.2 457,109 - DVU0408 0.28 +0.1 457,150 + DVU0408 0.30 -0.6 457,176 + DVU0408 0.31 +1.4 457,229 - DVU0408 0.34 -1.6 457,253 + DVU0408 0.35 -2.2 457,258 + DVU0408 0.35 -0.2 457,260 - DVU0408 0.35 -0.8 457,266 - DVU0408 0.35 -1.3 457,283 - DVU0408 0.36 -2.3 457,505 - DVU0408 0.47 -0.4 457,561 - DVU0408 0.49 -1.1 457,578 + DVU0408 0.50 +0.3 457,578 + DVU0408 0.50 -0.7 457,586 - DVU0408 0.50 -0.5 457,593 - DVU0408 0.51 -0.6 457,640 - DVU0408 0.53 -1.3 457,640 - DVU0408 0.53 -0.3 457,700 + DVU0408 0.56 -0.7 457,704 + DVU0408 0.56 -0.7 457,723 + DVU0408 0.57 -1.8 457,765 + DVU0408 0.59 -0.6 457,934 - DVU0408 0.67 -0.1 457,962 + DVU0408 0.68 -1.4 457,962 + DVU0408 0.68 -0.7 457,970 - DVU0408 0.68 -0.9 458,196 + DVU0408 0.79 -0.5 458,237 + DVU0408 0.81 -2.2 458,252 + DVU0408 0.81 -0.5 458,316 + DVU0408 0.84 -0.5 458,381 + DVU0408 0.87 -1.8 458,383 + DVU0408 0.87 -0.8 458,441 - -0.4 458,567 + -0.9 458,575 - -1.7 458,713 + +1.0 458,779 - -0.0 458,792 + -0.2 458,792 + -1.1 458,839 + -0.0 458,886 + +0.0 458,894 - +0.1 458,906 + +3.3 458,914 - DVU0409 0.11 -0.1 458,994 - DVU0409 0.34 -1.6 459,177 + DVU0409 0.86 -0.8 459,177 + DVU0409 0.86 -1.7 459,202 - -1.2 459,448 + DVU0410 0.36 -1.4 459,448 + DVU0410 0.36 -1.2 459,482 - DVU0410 0.41 -1.1 459,500 + DVU0410 0.44 -1.6 459,500 + DVU0410 0.44 -1.3 459,500 + DVU0410 0.44 -1.3 459,562 + DVU0410 0.55 -1.5 459,577 + DVU0410 0.57 -0.7 459,580 - DVU0410 0.58 -1.1 459,585 - DVU0410 0.58 -1.0
Or see this region's nucleotide sequence