Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0183

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0182 and DVU0183 are separated by 167 nucleotidesDVU0183 and DVU0184 are separated by 128 nucleotidesDVU0184 and DVU0185 are separated by 25 nucleotidesDVU0185 and DVU0186 are separated by 105 nucleotides DVU0182: DVU0182 - radical SAM domain protein (TIGR), at 226,416 to 227,339 DVU0182 DVU0183: DVU0183 - methyl-accepting chemotaxis protein (TIGR), at 227,507 to 229,276 DVU0183 DVU0184: DVU0184 - hypothetical protein (TIGR), at 229,405 to 229,824 DVU0184 DVU0185: DVU0185 - hypothetical protein (TIGR), at 229,850 to 229,915 DVU0185 DVU0186: DVU0186 - conserved hypothetical protein (TIGR), at 230,021 to 230,800 DVU0186 Position (kb) 227 228 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 226.518 kb on - strand, within DVU0182at 226.549 kb on - strand, within DVU0182at 226.597 kb on + strand, within DVU0182at 226.597 kb on + strand, within DVU0182at 226.597 kb on + strand, within DVU0182at 226.605 kb on - strand, within DVU0182at 226.605 kb on - strand, within DVU0182at 226.605 kb on - strand, within DVU0182at 226.630 kb on + strand, within DVU0182at 226.660 kb on - strand, within DVU0182at 226.789 kb on + strand, within DVU0182at 226.789 kb on + strand, within DVU0182at 226.790 kb on + strand, within DVU0182at 226.797 kb on - strand, within DVU0182at 226.805 kb on + strand, within DVU0182at 226.810 kb on + strand, within DVU0182at 226.934 kb on - strand, within DVU0182at 226.936 kb on + strand, within DVU0182at 226.939 kb on - strand, within DVU0182at 226.939 kb on - strand, within DVU0182at 226.944 kb on - strand, within DVU0182at 226.958 kb on + strand, within DVU0182at 227.017 kb on - strand, within DVU0182at 227.029 kb on - strand, within DVU0182at 227.078 kb on + strand, within DVU0182at 227.078 kb on + strand, within DVU0182at 227.082 kb on - strand, within DVU0182at 227.086 kb on - strand, within DVU0182at 227.155 kb on - strand, within DVU0182at 227.168 kb on + strand, within DVU0182at 227.182 kb on - strand, within DVU0182at 227.215 kb on + strand, within DVU0182at 227.222 kb on - strand, within DVU0182at 227.294 kb on + strandat 227.308 kb on - strandat 227.313 kb on - strandat 227.315 kb on - strandat 227.331 kb on - strandat 227.358 kb on + strandat 227.412 kb on - strandat 227.430 kb on - strandat 227.449 kb on - strandat 227.468 kb on - strandat 227.483 kb on - strandat 227.490 kb on + strandat 227.504 kb on + strandat 227.635 kb on + strandat 227.635 kb on + strandat 227.680 kb on - strandat 227.697 kb on + strand, within DVU0183at 227.730 kb on - strand, within DVU0183at 227.749 kb on - strand, within DVU0183at 227.814 kb on + strand, within DVU0183at 227.829 kb on + strand, within DVU0183at 227.829 kb on + strand, within DVU0183at 227.837 kb on - strand, within DVU0183at 227.846 kb on + strand, within DVU0183at 227.864 kb on - strand, within DVU0183at 227.864 kb on - strand, within DVU0183at 227.874 kb on - strand, within DVU0183at 227.885 kb on + strand, within DVU0183at 227.913 kb on - strand, within DVU0183at 227.935 kb on - strand, within DVU0183at 228.093 kb on + strand, within DVU0183at 228.115 kb on - strand, within DVU0183at 228.189 kb on - strand, within DVU0183at 228.221 kb on - strand, within DVU0183at 228.265 kb on + strand, within DVU0183at 228.273 kb on - strand, within DVU0183at 228.318 kb on + strand, within DVU0183at 228.349 kb on - strand, within DVU0183at 228.351 kb on + strand, within DVU0183at 228.357 kb on + strand, within DVU0183at 228.502 kb on - strand, within DVU0183at 228.516 kb on + strand, within DVU0183at 228.516 kb on + strand, within DVU0183at 228.516 kb on + strand, within DVU0183at 228.516 kb on + strand, within DVU0183at 228.548 kb on - strand, within DVU0183at 228.564 kb on + strand, within DVU0183at 228.663 kb on - strand, within DVU0183at 228.671 kb on - strand, within DVU0183at 228.684 kb on + strand, within DVU0183at 228.692 kb on - strand, within DVU0183at 228.726 kb on - strand, within DVU0183at 228.732 kb on - strand, within DVU0183at 228.734 kb on + strand, within DVU0183at 228.742 kb on - strand, within DVU0183at 228.809 kb on - strand, within DVU0183at 228.811 kb on - strand, within DVU0183at 228.811 kb on - strand, within DVU0183at 228.844 kb on - strand, within DVU0183at 228.846 kb on + strand, within DVU0183at 228.872 kb on - strand, within DVU0183at 228.873 kb on + strand, within DVU0183at 228.873 kb on + strand, within DVU0183at 228.885 kb on + strand, within DVU0183at 228.900 kb on - strand, within DVU0183at 228.981 kb on + strand, within DVU0183at 229.021 kb on + strand, within DVU0183at 229.025 kb on + strand, within DVU0183at 229.072 kb on + strand, within DVU0183at 229.097 kb on + strand, within DVU0183at 229.135 kb on + strandat 229.217 kb on + strandat 229.217 kb on + strandat 229.222 kb on + strandat 229.274 kb on - strandat 229.296 kb on + strandat 229.299 kb on - strandat 229.304 kb on - strandat 229.318 kb on + strandat 229.473 kb on + strand, within DVU0184at 229.481 kb on - strand, within DVU0184at 229.481 kb on - strand, within DVU0184at 229.542 kb on - strand, within DVU0184at 229.587 kb on + strand, within DVU0184at 229.595 kb on - strand, within DVU0184at 229.595 kb on - strand, within DVU0184at 229.597 kb on + strand, within DVU0184at 229.619 kb on + strand, within DVU0184at 229.619 kb on + strand, within DVU0184at 229.643 kb on + strand, within DVU0184at 229.651 kb on - strand, within DVU0184at 229.737 kb on - strand, within DVU0184at 229.963 kb on - strandat 229.981 kb on - strandat 229.991 kb on - strandat 230.077 kb on + strandat 230.085 kb on + strandat 230.098 kb on + strandat 230.164 kb on - strand, within DVU0186at 230.172 kb on - strand, within DVU0186at 230.228 kb on + strand, within DVU0186at 230.229 kb on + strand, within DVU0186at 230.234 kb on - strand, within DVU0186

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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226,518 - DVU0182 0.11 +1.3
226,549 - DVU0182 0.14 -0.2
226,597 + DVU0182 0.20 -0.9
226,597 + DVU0182 0.20 +0.2
226,597 + DVU0182 0.20 -0.4
226,605 - DVU0182 0.20 -0.3
226,605 - DVU0182 0.20 +0.6
226,605 - DVU0182 0.20 -0.1
226,630 + DVU0182 0.23 -0.6
226,660 - DVU0182 0.26 -0.7
226,789 + DVU0182 0.40 -0.2
226,789 + DVU0182 0.40 -2.1
226,790 + DVU0182 0.40 -0.1
226,797 - DVU0182 0.41 +0.7
226,805 + DVU0182 0.42 -2.4
226,810 + DVU0182 0.43 +1.2
226,934 - DVU0182 0.56 +1.8
226,936 + DVU0182 0.56 -0.5
226,939 - DVU0182 0.57 -1.6
226,939 - DVU0182 0.57 +0.0
226,944 - DVU0182 0.57 -0.5
226,958 + DVU0182 0.59 -0.3
227,017 - DVU0182 0.65 -0.7
227,029 - DVU0182 0.66 -0.9
227,078 + DVU0182 0.72 -0.5
227,078 + DVU0182 0.72 +0.6
227,082 - DVU0182 0.72 +0.1
227,086 - DVU0182 0.73 -0.6
227,155 - DVU0182 0.80 -0.2
227,168 + DVU0182 0.81 -2.7
227,182 - DVU0182 0.83 +0.3
227,215 + DVU0182 0.86 -0.8
227,222 - DVU0182 0.87 -0.2
227,294 + +1.0
227,308 - -0.4
227,313 - -1.1
227,315 - -0.1
227,331 - -0.1
227,358 + +0.1
227,412 - -0.3
227,430 - +0.1
227,449 - +1.6
227,468 - +0.2
227,483 - -0.4
227,490 + -0.0
227,504 + -0.0
227,635 + +1.2
227,635 + +1.2
227,680 - -1.1
227,697 + DVU0183 0.11 -2.8
227,730 - DVU0183 0.13 -0.3
227,749 - DVU0183 0.14 +0.3
227,814 + DVU0183 0.17 +0.4
227,829 + DVU0183 0.18 -0.7
227,829 + DVU0183 0.18 +0.0
227,837 - DVU0183 0.19 +0.1
227,846 + DVU0183 0.19 +0.6
227,864 - DVU0183 0.20 +0.3
227,864 - DVU0183 0.20 +2.5
227,874 - DVU0183 0.21 +0.2
227,885 + DVU0183 0.21 -0.8
227,913 - DVU0183 0.23 -0.5
227,935 - DVU0183 0.24 -0.4
228,093 + DVU0183 0.33 -0.9
228,115 - DVU0183 0.34 +0.2
228,189 - DVU0183 0.39 +0.0
228,221 - DVU0183 0.40 -0.2
228,265 + DVU0183 0.43 -1.3
228,273 - DVU0183 0.43 +0.1
228,318 + DVU0183 0.46 -0.4
228,349 - DVU0183 0.48 +0.0
228,351 + DVU0183 0.48 -0.5
228,357 + DVU0183 0.48 +0.0
228,502 - DVU0183 0.56 +0.2
228,516 + DVU0183 0.57 -0.8
228,516 + DVU0183 0.57 -0.0
228,516 + DVU0183 0.57 +0.0
228,516 + DVU0183 0.57 +0.0
228,548 - DVU0183 0.59 -1.1
228,564 + DVU0183 0.60 +0.2
228,663 - DVU0183 0.65 +0.0
228,671 - DVU0183 0.66 +0.8
228,684 + DVU0183 0.66 +0.1
228,692 - DVU0183 0.67 -0.2
228,726 - DVU0183 0.69 -1.1
228,732 - DVU0183 0.69 -0.3
228,734 + DVU0183 0.69 +0.1
228,742 - DVU0183 0.70 +0.3
228,809 - DVU0183 0.74 -0.1
228,811 - DVU0183 0.74 -0.2
228,811 - DVU0183 0.74 -0.3
228,844 - DVU0183 0.76 -0.3
228,846 + DVU0183 0.76 -0.6
228,872 - DVU0183 0.77 +0.3
228,873 + DVU0183 0.77 +0.1
228,873 + DVU0183 0.77 +0.4
228,885 + DVU0183 0.78 +0.2
228,900 - DVU0183 0.79 +0.8
228,981 + DVU0183 0.83 +0.4
229,021 + DVU0183 0.86 +0.0
229,025 + DVU0183 0.86 -0.3
229,072 + DVU0183 0.88 +0.0
229,097 + DVU0183 0.90 +0.1
229,135 + +1.0
229,217 + -0.6
229,217 + -0.9
229,222 + +0.1
229,274 - +0.8
229,296 + -0.0
229,299 - -1.1
229,304 - -0.2
229,318 + -1.6
229,473 + DVU0184 0.16 +0.2
229,481 - DVU0184 0.18 +0.1
229,481 - DVU0184 0.18 +0.1
229,542 - DVU0184 0.33 +0.6
229,587 + DVU0184 0.43 -3.2
229,595 - DVU0184 0.45 -0.0
229,595 - DVU0184 0.45 +0.2
229,597 + DVU0184 0.46 -1.1
229,619 + DVU0184 0.51 +0.9
229,619 + DVU0184 0.51 -0.1
229,643 + DVU0184 0.57 +0.0
229,651 - DVU0184 0.59 -1.1
229,737 - DVU0184 0.79 -0.6
229,963 - +1.4
229,981 - +0.8
229,991 - -1.6
230,077 + -2.6
230,085 + -0.9
230,098 + -2.4
230,164 - DVU0186 0.18 -0.1
230,172 - DVU0186 0.19 -1.3
230,228 + DVU0186 0.27 -2.6
230,229 + DVU0186 0.27 -1.6
230,234 - DVU0186 0.27 -2.6

Or see this region's nucleotide sequence