Experiment: MoLS4 with L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3387 and DVU3388 are separated by 167 nucleotides DVU3388 and topA are separated by 132 nucleotides
DVU3387: DVU3387 - hypothetical protein (TIGR), at 3,561,502 to 3,562,515
DVU3387
DVU3388: DVU3388 - lipoprotein, putative (TIGR), at 3,562,683 to 3,563,510
DVU3388
DVU3389: topA - DNA topoisomerase I (TIGR), at 3,563,643 to 3,565,925
topA
Position (kb)
3562
3563
3564 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3561.690 kb on - strand, within DVU3387 at 3561.719 kb on + strand, within DVU3387 at 3561.729 kb on + strand, within DVU3387 at 3561.732 kb on - strand, within DVU3387 at 3561.748 kb on - strand, within DVU3387 at 3561.759 kb on + strand, within DVU3387 at 3561.759 kb on + strand, within DVU3387 at 3561.764 kb on + strand, within DVU3387 at 3561.781 kb on + strand, within DVU3387 at 3561.836 kb on - strand, within DVU3387 at 3561.858 kb on - strand, within DVU3387 at 3561.912 kb on - strand, within DVU3387 at 3561.934 kb on + strand, within DVU3387 at 3561.944 kb on + strand, within DVU3387 at 3561.947 kb on - strand, within DVU3387 at 3562.059 kb on + strand, within DVU3387 at 3562.095 kb on - strand, within DVU3387 at 3562.115 kb on - strand, within DVU3387 at 3562.120 kb on + strand, within DVU3387 at 3562.128 kb on - strand, within DVU3387 at 3562.142 kb on - strand, within DVU3387 at 3562.195 kb on + strand, within DVU3387 at 3562.203 kb on - strand, within DVU3387 at 3562.243 kb on - strand, within DVU3387 at 3562.266 kb on - strand, within DVU3387 at 3562.266 kb on - strand, within DVU3387 at 3562.302 kb on + strand, within DVU3387 at 3562.336 kb on + strand, within DVU3387 at 3562.346 kb on - strand, within DVU3387 at 3562.417 kb on + strand at 3562.471 kb on - strand at 3562.480 kb on + strand at 3562.482 kb on - strand at 3562.538 kb on - strand at 3562.545 kb on + strand at 3562.549 kb on - strand at 3562.572 kb on - strand at 3562.655 kb on + strand at 3562.666 kb on + strand at 3562.705 kb on - strand at 3562.707 kb on - strand at 3562.709 kb on + strand at 3562.717 kb on - strand at 3562.747 kb on + strand at 3562.752 kb on - strand at 3562.852 kb on - strand, within DVU3388 at 3562.852 kb on - strand, within DVU3388 at 3562.888 kb on + strand, within DVU3388 at 3562.939 kb on - strand, within DVU3388 at 3562.945 kb on + strand, within DVU3388 at 3562.945 kb on + strand, within DVU3388 at 3562.983 kb on + strand, within DVU3388 at 3562.984 kb on + strand, within DVU3388 at 3562.992 kb on - strand, within DVU3388 at 3563.046 kb on + strand, within DVU3388 at 3563.054 kb on + strand, within DVU3388 at 3563.081 kb on + strand, within DVU3388 at 3563.137 kb on + strand, within DVU3388 at 3563.165 kb on - strand, within DVU3388 at 3563.187 kb on + strand, within DVU3388 at 3563.187 kb on + strand, within DVU3388 at 3563.228 kb on - strand, within DVU3388 at 3563.265 kb on + strand, within DVU3388 at 3563.298 kb on + strand, within DVU3388 at 3563.298 kb on - strand, within DVU3388 at 3563.298 kb on - strand, within DVU3388 at 3563.339 kb on + strand, within DVU3388 at 3563.418 kb on - strand, within DVU3388 at 3563.435 kb on + strand at 3563.492 kb on + strand at 3563.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N) remove 3,561,690 - DVU3387 0.19 -1.4 3,561,719 + DVU3387 0.21 -2.3 3,561,729 + DVU3387 0.22 -2.1 3,561,732 - DVU3387 0.23 -1.4 3,561,748 - DVU3387 0.24 -0.6 3,561,759 + DVU3387 0.25 -1.8 3,561,759 + DVU3387 0.25 +1.2 3,561,764 + DVU3387 0.26 -1.7 3,561,781 + DVU3387 0.28 -1.3 3,561,836 - DVU3387 0.33 -3.1 3,561,858 - DVU3387 0.35 -1.5 3,561,912 - DVU3387 0.40 -1.6 3,561,934 + DVU3387 0.43 -1.4 3,561,944 + DVU3387 0.44 -0.5 3,561,947 - DVU3387 0.44 -2.9 3,562,059 + DVU3387 0.55 -0.7 3,562,095 - DVU3387 0.58 -1.3 3,562,115 - DVU3387 0.60 -1.2 3,562,120 + DVU3387 0.61 -0.1 3,562,128 - DVU3387 0.62 -0.9 3,562,142 - DVU3387 0.63 -1.5 3,562,195 + DVU3387 0.68 -1.4 3,562,203 - DVU3387 0.69 -0.0 3,562,243 - DVU3387 0.73 -1.0 3,562,266 - DVU3387 0.75 -1.3 3,562,266 - DVU3387 0.75 -0.2 3,562,302 + DVU3387 0.79 -2.7 3,562,336 + DVU3387 0.82 -0.4 3,562,346 - DVU3387 0.83 -0.7 3,562,417 + -1.3 3,562,471 - -0.6 3,562,480 + -1.3 3,562,482 - -1.2 3,562,538 - +0.1 3,562,545 + -0.1 3,562,549 - -0.6 3,562,572 - -0.1 3,562,655 + -1.3 3,562,666 + -0.7 3,562,705 - -1.7 3,562,707 - -0.2 3,562,709 + +0.6 3,562,717 - -0.2 3,562,747 + -0.2 3,562,752 - -0.4 3,562,852 - DVU3388 0.20 -0.1 3,562,852 - DVU3388 0.20 -0.0 3,562,888 + DVU3388 0.25 -0.2 3,562,939 - DVU3388 0.31 +0.9 3,562,945 + DVU3388 0.32 -0.0 3,562,945 + DVU3388 0.32 +0.3 3,562,983 + DVU3388 0.36 -0.0 3,562,984 + DVU3388 0.36 +0.2 3,562,992 - DVU3388 0.37 -0.2 3,563,046 + DVU3388 0.44 +0.4 3,563,054 + DVU3388 0.45 -0.3 3,563,081 + DVU3388 0.48 +1.3 3,563,137 + DVU3388 0.55 -0.6 3,563,165 - DVU3388 0.58 +0.2 3,563,187 + DVU3388 0.61 +0.0 3,563,187 + DVU3388 0.61 -1.0 3,563,228 - DVU3388 0.66 -0.3 3,563,265 + DVU3388 0.70 +0.7 3,563,298 + DVU3388 0.74 +0.5 3,563,298 - DVU3388 0.74 -0.1 3,563,298 - DVU3388 0.74 -0.2 3,563,339 + DVU3388 0.79 -0.3 3,563,418 - DVU3388 0.89 -0.1 3,563,435 + +0.0 3,563,492 + -0.4 3,563,553 - +1.1
Or see this region's nucleotide sequence