Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3255

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3254 and DVU3255 are separated by 35 nucleotidesDVU3255 and mutM are separated by 95 nucleotides DVU3254: DVU3254 - PDZ domain protein (TIGR), at 3,426,297 to 3,427,661 DVU3254 DVU3255: DVU3255 - transcriptional regulator, CopG family (TIGR), at 3,427,697 to 3,428,095 DVU3255 DVU3256: mutM - formamidopyrimidine-DNA glycosylase (TIGR), at 3,428,191 to 3,429,288 mutM Position (kb) 3427 3428 3429Strain fitness (log2 ratio) -3 -2 -1 0 1at 3426.722 kb on + strand, within DVU3254at 3426.730 kb on - strand, within DVU3254at 3426.820 kb on + strand, within DVU3254at 3426.828 kb on - strand, within DVU3254at 3426.828 kb on - strand, within DVU3254at 3427.040 kb on + strand, within DVU3254at 3427.118 kb on - strand, within DVU3254at 3427.150 kb on + strand, within DVU3254at 3427.198 kb on - strand, within DVU3254at 3427.229 kb on + strand, within DVU3254at 3427.230 kb on + strand, within DVU3254at 3427.237 kb on - strand, within DVU3254at 3427.317 kb on + strand, within DVU3254at 3427.396 kb on + strand, within DVU3254at 3427.409 kb on - strand, within DVU3254at 3427.410 kb on - strand, within DVU3254at 3427.475 kb on - strand, within DVU3254at 3427.543 kb on - strandat 3427.547 kb on + strandat 3427.550 kb on - strandat 3427.688 kb on - strandat 3427.699 kb on + strandat 3427.809 kb on - strand, within DVU3255at 3427.835 kb on - strand, within DVU3255at 3427.880 kb on + strand, within DVU3255at 3427.888 kb on - strand, within DVU3255at 3427.890 kb on + strand, within DVU3255at 3427.893 kb on - strand, within DVU3255at 3427.898 kb on - strand, within DVU3255at 3427.941 kb on + strand, within DVU3255at 3427.978 kb on - strand, within DVU3255at 3428.030 kb on - strand, within DVU3255at 3428.114 kb on + strandat 3428.114 kb on + strandat 3428.114 kb on + strandat 3428.192 kb on + strandat 3428.200 kb on - strandat 3428.272 kb on - strandat 3428.280 kb on - strandat 3428.282 kb on - strandat 3428.301 kb on + strand, within mutMat 3428.311 kb on + strand, within mutMat 3428.322 kb on + strand, within mutMat 3428.512 kb on - strand, within mutMat 3428.517 kb on - strand, within mutMat 3428.517 kb on - strand, within mutMat 3428.517 kb on - strand, within mutMat 3428.591 kb on - strand, within mutMat 3428.603 kb on + strand, within mutMat 3428.658 kb on - strand, within mutMat 3428.722 kb on - strand, within mutMat 3428.743 kb on + strand, within mutMat 3428.743 kb on + strand, within mutMat 3428.766 kb on - strand, within mutMat 3428.840 kb on + strand, within mutMat 3428.848 kb on - strand, within mutMat 3428.848 kb on - strand, within mutMat 3428.848 kb on - strand, within mutMat 3428.939 kb on + strand, within mutMat 3429.036 kb on + strand, within mutMat 3429.036 kb on + strand, within mutMat 3429.044 kb on - strand, within mutMat 3429.044 kb on - strand, within mutMat 3429.060 kb on + strand, within mutM

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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3,426,722 + DVU3254 0.31 -1.2
3,426,730 - DVU3254 0.32 -0.9
3,426,820 + DVU3254 0.38 -0.8
3,426,828 - DVU3254 0.39 -0.7
3,426,828 - DVU3254 0.39 -1.6
3,427,040 + DVU3254 0.54 -3.1
3,427,118 - DVU3254 0.60 -1.2
3,427,150 + DVU3254 0.62 -1.2
3,427,198 - DVU3254 0.66 -1.2
3,427,229 + DVU3254 0.68 -0.5
3,427,230 + DVU3254 0.68 -0.9
3,427,237 - DVU3254 0.69 -0.9
3,427,317 + DVU3254 0.75 -0.9
3,427,396 + DVU3254 0.81 +0.3
3,427,409 - DVU3254 0.81 -1.1
3,427,410 - DVU3254 0.82 -0.4
3,427,475 - DVU3254 0.86 +0.1
3,427,543 - +0.3
3,427,547 + +1.7
3,427,550 - -0.2
3,427,688 - -0.1
3,427,699 + +0.0
3,427,809 - DVU3255 0.28 -0.8
3,427,835 - DVU3255 0.35 +0.3
3,427,880 + DVU3255 0.46 -0.3
3,427,888 - DVU3255 0.48 -0.2
3,427,890 + DVU3255 0.48 +0.0
3,427,893 - DVU3255 0.49 +0.3
3,427,898 - DVU3255 0.50 -1.2
3,427,941 + DVU3255 0.61 +0.9
3,427,978 - DVU3255 0.70 +0.1
3,428,030 - DVU3255 0.83 +0.6
3,428,114 + +0.1
3,428,114 + -0.3
3,428,114 + -0.1
3,428,192 + +0.4
3,428,200 - +0.2
3,428,272 - +0.9
3,428,280 - -1.1
3,428,282 - -0.2
3,428,301 + mutM DVU3256 0.10 -0.7
3,428,311 + mutM DVU3256 0.11 -0.6
3,428,322 + mutM DVU3256 0.12 +0.4
3,428,512 - mutM DVU3256 0.29 +0.0
3,428,517 - mutM DVU3256 0.30 +0.2
3,428,517 - mutM DVU3256 0.30 +0.1
3,428,517 - mutM DVU3256 0.30 +0.1
3,428,591 - mutM DVU3256 0.36 -1.3
3,428,603 + mutM DVU3256 0.38 -0.2
3,428,658 - mutM DVU3256 0.43 -1.4
3,428,722 - mutM DVU3256 0.48 +0.2
3,428,743 + mutM DVU3256 0.50 +0.1
3,428,743 + mutM DVU3256 0.50 +0.2
3,428,766 - mutM DVU3256 0.52 -0.1
3,428,840 + mutM DVU3256 0.59 +0.1
3,428,848 - mutM DVU3256 0.60 -0.4
3,428,848 - mutM DVU3256 0.60 +0.1
3,428,848 - mutM DVU3256 0.60 -0.4
3,428,939 + mutM DVU3256 0.68 +0.3
3,429,036 + mutM DVU3256 0.77 -0.3
3,429,036 + mutM DVU3256 0.77 -0.1
3,429,044 - mutM DVU3256 0.78 -0.2
3,429,044 - mutM DVU3256 0.78 -1.8
3,429,060 + mutM DVU3256 0.79 +0.2

Or see this region's nucleotide sequence