Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1467

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargB and hslU are separated by 15 nucleotideshslU and htrA are separated by 111 nucleotides DVU1466: argB - acetylglutamate kinase (TIGR), at 1,545,702 to 1,546,628 argB DVU1467: hslU - heat shock protein HslVU, ATPase subunit HslU (TIGR), at 1,546,644 to 1,547,969 hslU DVU1468: htrA - peptidase/PDZ domain protein (TIGR), at 1,548,081 to 1,549,529 htrA Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -3 -2 -1 0 1at 1545.698 kb on - strandat 1545.717 kb on + strandat 1545.731 kb on + strandat 1545.842 kb on + strand, within argBat 1545.859 kb on - strand, within argBat 1546.186 kb on + strand, within argBat 1546.360 kb on - strand, within argBat 1546.370 kb on - strand, within argBat 1546.485 kb on + strand, within argBat 1546.600 kb on - strandat 1546.631 kb on - strandat 1546.665 kb on + strandat 1546.684 kb on + strandat 1546.840 kb on - strand, within hslUat 1546.875 kb on + strand, within hslUat 1546.883 kb on - strand, within hslUat 1546.951 kb on + strand, within hslUat 1547.033 kb on - strand, within hslUat 1547.070 kb on + strand, within hslUat 1547.163 kb on - strand, within hslUat 1547.183 kb on - strand, within hslUat 1547.220 kb on + strand, within hslUat 1547.263 kb on + strand, within hslUat 1547.271 kb on - strand, within hslUat 1547.284 kb on + strand, within hslUat 1547.292 kb on - strand, within hslUat 1547.310 kb on + strand, within hslUat 1547.318 kb on - strand, within hslUat 1547.335 kb on - strand, within hslUat 1547.400 kb on - strand, within hslUat 1547.546 kb on + strand, within hslUat 1547.604 kb on - strand, within hslUat 1547.627 kb on - strand, within hslUat 1547.705 kb on + strand, within hslUat 1547.746 kb on + strand, within hslUat 1547.746 kb on + strand, within hslUat 1547.746 kb on + strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.754 kb on - strand, within hslUat 1547.756 kb on + strand, within hslUat 1547.781 kb on - strand, within hslUat 1547.787 kb on - strand, within hslUat 1547.964 kb on + strandat 1548.069 kb on + strandat 1548.162 kb on - strandat 1548.201 kb on + strandat 1548.201 kb on + strandat 1548.257 kb on - strand, within htrAat 1548.268 kb on + strand, within htrAat 1548.362 kb on + strand, within htrAat 1548.461 kb on + strand, within htrAat 1548.502 kb on - strand, within htrAat 1548.548 kb on - strand, within htrAat 1548.564 kb on + strand, within htrAat 1548.577 kb on + strand, within htrAat 1548.585 kb on - strand, within htrAat 1548.595 kb on - strand, within htrAat 1548.745 kb on - strand, within htrAat 1548.748 kb on + strand, within htrAat 1548.756 kb on - strand, within htrAat 1548.908 kb on + strand, within htrAat 1548.947 kb on + strand, within htrA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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1,545,698 - -0.9
1,545,717 + +0.2
1,545,731 + -0.7
1,545,842 + argB DVU1466 0.15 -0.7
1,545,859 - argB DVU1466 0.17 -1.5
1,546,186 + argB DVU1466 0.52 -0.6
1,546,360 - argB DVU1466 0.71 -0.6
1,546,370 - argB DVU1466 0.72 -0.2
1,546,485 + argB DVU1466 0.84 -1.7
1,546,600 - -0.2
1,546,631 - -0.3
1,546,665 + -0.3
1,546,684 + -0.3
1,546,840 - hslU DVU1467 0.15 -0.7
1,546,875 + hslU DVU1467 0.17 -0.9
1,546,883 - hslU DVU1467 0.18 -0.6
1,546,951 + hslU DVU1467 0.23 +0.3
1,547,033 - hslU DVU1467 0.29 -0.2
1,547,070 + hslU DVU1467 0.32 -0.4
1,547,163 - hslU DVU1467 0.39 -0.8
1,547,183 - hslU DVU1467 0.41 -0.4
1,547,220 + hslU DVU1467 0.43 -0.5
1,547,263 + hslU DVU1467 0.47 -0.3
1,547,271 - hslU DVU1467 0.47 +0.7
1,547,284 + hslU DVU1467 0.48 -0.7
1,547,292 - hslU DVU1467 0.49 -0.4
1,547,310 + hslU DVU1467 0.50 -2.0
1,547,318 - hslU DVU1467 0.51 -0.9
1,547,335 - hslU DVU1467 0.52 -0.2
1,547,400 - hslU DVU1467 0.57 -2.3
1,547,546 + hslU DVU1467 0.68 -2.1
1,547,604 - hslU DVU1467 0.72 -1.4
1,547,627 - hslU DVU1467 0.74 +1.0
1,547,705 + hslU DVU1467 0.80 -0.4
1,547,746 + hslU DVU1467 0.83 -1.0
1,547,746 + hslU DVU1467 0.83 -0.8
1,547,746 + hslU DVU1467 0.83 -0.0
1,547,754 - hslU DVU1467 0.84 -1.4
1,547,754 - hslU DVU1467 0.84 -0.5
1,547,754 - hslU DVU1467 0.84 -1.7
1,547,754 - hslU DVU1467 0.84 -0.3
1,547,756 + hslU DVU1467 0.84 -0.5
1,547,781 - hslU DVU1467 0.86 -0.6
1,547,787 - hslU DVU1467 0.86 -0.4
1,547,964 + -0.5
1,548,069 + -0.7
1,548,162 - -0.4
1,548,201 + +0.2
1,548,201 + -0.6
1,548,257 - htrA DVU1468 0.12 -0.2
1,548,268 + htrA DVU1468 0.13 +0.1
1,548,362 + htrA DVU1468 0.19 +0.3
1,548,461 + htrA DVU1468 0.26 -0.5
1,548,502 - htrA DVU1468 0.29 -0.7
1,548,548 - htrA DVU1468 0.32 -0.3
1,548,564 + htrA DVU1468 0.33 +0.3
1,548,577 + htrA DVU1468 0.34 -0.1
1,548,585 - htrA DVU1468 0.35 -1.4
1,548,595 - htrA DVU1468 0.35 -0.1
1,548,745 - htrA DVU1468 0.46 +0.1
1,548,748 + htrA DVU1468 0.46 -2.8
1,548,756 - htrA DVU1468 0.47 -0.5
1,548,908 + htrA DVU1468 0.57 -0.3
1,548,947 + htrA DVU1468 0.60 -0.7

Or see this region's nucleotide sequence