Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0830

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntptsI and ptsH are separated by 10 nucleotidesptsH and DVU0831 are separated by 60 nucleotides DVU0829: ptsI - phosphoenolpyruvate-protein phosphotransferase (TIGR), at 919,099 to 920,871 ptsI DVU0830: ptsH - phosphocarrier protein HPr (TIGR), at 920,882 to 921,142 ptsH DVU0831: DVU0831 - PTS system, IID component, putative (TIGR), at 921,203 to 921,961 DVU0831 Position (kb) 920 921 922Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 919.986 kb on + strand, within ptsIat 919.986 kb on + strand, within ptsIat 919.989 kb on - strand, within ptsIat 919.989 kb on - strand, within ptsIat 919.989 kb on - strand, within ptsIat 919.989 kb on - strand, within ptsIat 919.989 kb on - strand, within ptsIat 920.050 kb on - strand, within ptsIat 920.141 kb on + strand, within ptsIat 920.314 kb on - strand, within ptsIat 921.108 kb on - strand, within ptsHat 921.231 kb on - strandat 921.384 kb on + strand, within DVU0831at 921.384 kb on + strand, within DVU0831at 921.428 kb on - strand, within DVU0831at 921.475 kb on + strand, within DVU0831at 921.482 kb on - strand, within DVU0831at 921.493 kb on + strand, within DVU0831at 921.557 kb on - strand, within DVU0831at 921.583 kb on + strand, within DVU0831at 921.594 kb on + strand, within DVU0831at 921.708 kb on - strand, within DVU0831at 921.819 kb on + strand, within DVU0831at 921.933 kb on + strandat 921.941 kb on - strandat 922.102 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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919,986 + ptsI DVU0829 0.50 -3.5
919,986 + ptsI DVU0829 0.50 -4.5
919,989 - ptsI DVU0829 0.50 -3.3
919,989 - ptsI DVU0829 0.50 -1.3
919,989 - ptsI DVU0829 0.50 -3.4
919,989 - ptsI DVU0829 0.50 -1.1
919,989 - ptsI DVU0829 0.50 -3.5
920,050 - ptsI DVU0829 0.54 -3.6
920,141 + ptsI DVU0829 0.59 -1.2
920,314 - ptsI DVU0829 0.69 -1.2
921,108 - ptsH DVU0830 0.87 -6.6
921,231 - +0.2
921,384 + DVU0831 0.24 +0.9
921,384 + DVU0831 0.24 +1.1
921,428 - DVU0831 0.30 +0.9
921,475 + DVU0831 0.36 +0.6
921,482 - DVU0831 0.37 +1.0
921,493 + DVU0831 0.38 +0.9
921,557 - DVU0831 0.47 +0.9
921,583 + DVU0831 0.50 +1.2
921,594 + DVU0831 0.52 +1.3
921,708 - DVU0831 0.67 +0.3
921,819 + DVU0831 0.81 +1.2
921,933 + +1.4
921,941 - +0.1
922,102 + -0.3

Or see this region's nucleotide sequence