Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0715

Experiment: MoLS4 with L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlivH and livM overlap by 4 nucleotideslivM and livG overlap by 4 nucleotideslivG and livF are separated by 13 nucleotideslivF and DVU0717 are separated by 218 nucleotides DVU0713: livH - branched-chain amino acid ABC transporter, permease protein (TIGR), at 792,889 to 793,794 livH DVU0714: livM - branched-chain amino acid ABC transporter, permease protein (TIGR), at 793,791 to 794,744 livM DVU0715: livG - branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 794,741 to 795,508 livG DVU0716: livF - branched-chain amino acid ABC transporter, ATP-binding protein (TIGR), at 795,522 to 796,238 livF DVU0717: DVU0717 - GGDEF domain/EAL domain protein (TIGR), at 796,457 to 797,965 DVU0717 Position (kb) 794 795 796Strain fitness (log2 ratio) -2 -1 0 1at 793.755 kb on + strandat 793.762 kb on - strandat 793.795 kb on - strandat 793.827 kb on - strandat 793.827 kb on - strandat 793.829 kb on + strandat 793.875 kb on - strandat 793.941 kb on + strand, within livMat 794.000 kb on + strand, within livMat 794.008 kb on - strand, within livMat 794.008 kb on - strand, within livMat 794.008 kb on - strand, within livMat 794.083 kb on - strand, within livMat 794.146 kb on - strand, within livMat 794.251 kb on - strand, within livMat 794.333 kb on - strand, within livMat 794.345 kb on - strand, within livMat 794.399 kb on + strand, within livMat 794.441 kb on + strand, within livMat 794.480 kb on - strand, within livMat 794.632 kb on + strand, within livMat 794.657 kb on - strandat 794.678 kb on - strandat 794.678 kb on - strandat 794.802 kb on - strandat 794.845 kb on - strand, within livGat 794.860 kb on + strand, within livGat 794.896 kb on + strand, within livGat 795.005 kb on - strand, within livGat 795.073 kb on + strand, within livGat 795.088 kb on + strand, within livGat 795.348 kb on - strand, within livGat 795.348 kb on - strand, within livGat 795.457 kb on - strandat 795.524 kb on - strandat 795.647 kb on - strand, within livFat 795.733 kb on + strand, within livFat 795.733 kb on + strand, within livFat 795.764 kb on + strand, within livFat 795.897 kb on + strand, within livFat 795.979 kb on + strand, within livFat 796.068 kb on - strand, within livFat 796.078 kb on + strand, within livFat 796.122 kb on - strand, within livFat 796.285 kb on + strandat 796.293 kb on + strandat 796.361 kb on - strandat 796.415 kb on - strandat 796.463 kb on + strandat 796.463 kb on + strandat 796.463 kb on + strandat 796.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine (N)
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793,755 + -0.1
793,762 - -0.7
793,795 - -0.7
793,827 - -0.5
793,827 - -0.1
793,829 + -0.3
793,875 - -0.6
793,941 + livM DVU0714 0.16 +0.5
794,000 + livM DVU0714 0.22 -0.5
794,008 - livM DVU0714 0.23 -0.6
794,008 - livM DVU0714 0.23 +0.3
794,008 - livM DVU0714 0.23 -0.5
794,083 - livM DVU0714 0.31 -0.3
794,146 - livM DVU0714 0.37 -0.4
794,251 - livM DVU0714 0.48 -0.5
794,333 - livM DVU0714 0.57 -0.1
794,345 - livM DVU0714 0.58 -0.3
794,399 + livM DVU0714 0.64 -1.1
794,441 + livM DVU0714 0.68 -0.6
794,480 - livM DVU0714 0.72 -0.5
794,632 + livM DVU0714 0.88 -0.8
794,657 - -0.3
794,678 - -0.5
794,678 - -0.4
794,802 - -0.5
794,845 - livG DVU0715 0.14 -1.6
794,860 + livG DVU0715 0.15 -1.1
794,896 + livG DVU0715 0.20 -2.6
795,005 - livG DVU0715 0.34 -0.5
795,073 + livG DVU0715 0.43 -0.5
795,088 + livG DVU0715 0.45 -0.2
795,348 - livG DVU0715 0.79 -0.3
795,348 - livG DVU0715 0.79 -0.3
795,457 - -0.8
795,524 - -0.5
795,647 - livF DVU0716 0.17 -0.1
795,733 + livF DVU0716 0.29 -0.5
795,733 + livF DVU0716 0.29 +0.4
795,764 + livF DVU0716 0.34 -2.0
795,897 + livF DVU0716 0.52 -0.4
795,979 + livF DVU0716 0.64 -0.4
796,068 - livF DVU0716 0.76 -0.2
796,078 + livF DVU0716 0.78 -0.7
796,122 - livF DVU0716 0.84 -0.3
796,285 + -0.1
796,293 + +0.0
796,361 - +0.2
796,415 - +0.7
796,463 + -0.0
796,463 + -0.1
796,463 + -0.1
796,471 - -0.1

Or see this region's nucleotide sequence