Experiment: Nitrate reduction, replicate A t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_840 and Pf1N1B4_841 are separated by 231 nucleotides Pf1N1B4_841 and Pf1N1B4_842 are separated by 184 nucleotides
Pf1N1B4_840 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain, at 967,990 to 969,459
_840
Pf1N1B4_841 - ABC-type sugar transport systems, ATPase components, at 969,691 to 970,239
_841
Pf1N1B4_842 - putative membrane protein, at 970,424 to 971,191
_842
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 969.528 kb on - strand at 969.621 kb on + strand at 969.668 kb on + strand at 969.668 kb on + strand at 969.673 kb on + strand at 969.674 kb on - strand at 969.692 kb on + strand at 969.693 kb on - strand at 969.693 kb on - strand at 969.783 kb on + strand, within Pf1N1B4_841 at 969.784 kb on - strand, within Pf1N1B4_841 at 969.784 kb on - strand at 969.885 kb on + strand, within Pf1N1B4_841 at 969.989 kb on + strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 970.193 kb on - strand at 970.251 kb on - strand at 970.329 kb on + strand at 970.329 kb on + strand at 970.330 kb on - strand at 970.330 kb on - strand at 970.405 kb on - strand at 970.405 kb on - strand at 970.437 kb on + strand at 970.438 kb on - strand at 970.438 kb on - strand at 970.599 kb on + strand, within Pf1N1B4_842 at 970.599 kb on + strand at 970.600 kb on - strand, within Pf1N1B4_842 at 970.704 kb on + strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.713 kb on + strand, within Pf1N1B4_842 at 970.714 kb on - strand, within Pf1N1B4_842 at 970.715 kb on + strand, within Pf1N1B4_842 at 970.716 kb on - strand, within Pf1N1B4_842 at 970.811 kb on - strand, within Pf1N1B4_842 at 970.811 kb on - strand, within Pf1N1B4_842 at 970.824 kb on + strand, within Pf1N1B4_842 at 971.102 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.174 kb on + strand at 971.175 kb on - strand at 971.175 kb on - strand at 971.208 kb on + strand at 971.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1 remove 969,528 - -0.0 969,621 + -0.0 969,668 + -1.0 969,668 + -1.4 969,673 + -1.4 969,674 - -1.4 969,692 + -0.0 969,693 - -0.0 969,693 - -0.0 969,783 + Pf1N1B4_841 0.17 -0.0 969,784 - Pf1N1B4_841 0.17 -3.5 969,784 - -1.8 969,885 + Pf1N1B4_841 0.35 -0.0 969,989 + Pf1N1B4_841 0.54 -2.5 969,990 - Pf1N1B4_841 0.54 -1.0 969,990 - Pf1N1B4_841 0.54 -0.0 969,990 - Pf1N1B4_841 0.54 -3.3 969,990 - Pf1N1B4_841 0.54 -0.0 970,193 - -0.0 970,251 - -1.8 970,329 + -0.0 970,329 + -0.0 970,330 - -0.3 970,330 - -0.9 970,405 - -0.0 970,405 - -1.1 970,437 + -0.0 970,438 - -0.7 970,438 - -0.6 970,599 + Pf1N1B4_842 0.23 -0.7 970,599 + -2.0 970,600 - Pf1N1B4_842 0.23 -0.0 970,704 + Pf1N1B4_842 0.36 -0.0 970,705 - Pf1N1B4_842 0.37 -0.0 970,705 - Pf1N1B4_842 0.37 -0.0 970,705 - Pf1N1B4_842 0.37 -2.3 970,705 - Pf1N1B4_842 0.37 -0.0 970,705 - Pf1N1B4_842 0.37 -0.0 970,713 + Pf1N1B4_842 0.38 -2.2 970,714 - Pf1N1B4_842 0.38 -0.0 970,715 + Pf1N1B4_842 0.38 -0.0 970,716 - Pf1N1B4_842 0.38 -0.0 970,811 - Pf1N1B4_842 0.50 -0.0 970,811 - Pf1N1B4_842 0.50 -1.9 970,824 + Pf1N1B4_842 0.52 -0.9 971,102 + Pf1N1B4_842 0.88 -0.0 971,109 + Pf1N1B4_842 0.89 -0.0 971,109 + Pf1N1B4_842 0.89 -1.8 971,109 + Pf1N1B4_842 0.89 -0.0 971,109 + -0.0 971,110 - Pf1N1B4_842 0.89 -2.2 971,110 - Pf1N1B4_842 0.89 +1.0 971,110 - Pf1N1B4_842 0.89 -1.4 971,110 - Pf1N1B4_842 0.89 -0.0 971,110 - Pf1N1B4_842 0.89 -0.0 971,174 + -0.0 971,175 - -0.0 971,175 - -1.7 971,208 + -0.0 971,209 - -0.5
Or see this region's nucleotide sequence