Experiment: Nitrate reduction, replicate A t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_784 and Pf1N1B4_785 are separated by 282 nucleotides Pf1N1B4_785 and Pf1N1B4_786 are separated by 1 nucleotides Pf1N1B4_786 and Pf1N1B4_787 are separated by 23 nucleotides Pf1N1B4_787 and Pf1N1B4_788 are separated by 207 nucleotides
Pf1N1B4_784 - Transcriptional activator MetR, at 894,862 to 895,779
_784
Pf1N1B4_785 - acetyltransferase, GNAT family, at 896,062 to 896,577
_785
Pf1N1B4_786 - L-lysine permease, at 896,579 to 897,217
_786
Pf1N1B4_787 - Nudix hydrolase family protein PA3470, at 897,241 to 897,675
_787
Pf1N1B4_788 - Response regulator, at 897,883 to 899,241
_788
Position (kb) 896
897
898 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 895.606 kb on + strand, within Pf1N1B4_784 at 895.606 kb on + strand, within Pf1N1B4_784 at 895.606 kb on + strand at 895.606 kb on + strand, within Pf1N1B4_784 at 895.606 kb on + strand, within Pf1N1B4_784 at 895.606 kb on + strand, within Pf1N1B4_784 at 895.606 kb on + strand, within Pf1N1B4_784 at 895.607 kb on - strand, within Pf1N1B4_784 at 895.607 kb on - strand, within Pf1N1B4_784 at 895.607 kb on - strand, within Pf1N1B4_784 at 895.607 kb on - strand, within Pf1N1B4_784 at 895.607 kb on - strand, within Pf1N1B4_784 at 895.607 kb on - strand at 895.607 kb on - strand, within Pf1N1B4_784 at 895.607 kb on - strand, within Pf1N1B4_784 at 895.607 kb on - strand at 895.621 kb on + strand, within Pf1N1B4_784 at 895.621 kb on + strand, within Pf1N1B4_784 at 895.622 kb on - strand, within Pf1N1B4_784 at 895.670 kb on - strand, within Pf1N1B4_784 at 895.705 kb on + strand at 895.706 kb on - strand at 895.854 kb on + strand at 895.854 kb on + strand at 895.854 kb on + strand at 895.855 kb on - strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.863 kb on + strand at 895.864 kb on - strand at 895.961 kb on + strand at 895.961 kb on + strand at 895.962 kb on - strand at 896.114 kb on + strand, within Pf1N1B4_785 at 896.115 kb on - strand, within Pf1N1B4_785 at 896.178 kb on - strand, within Pf1N1B4_785 at 896.178 kb on - strand, within Pf1N1B4_785 at 896.316 kb on - strand, within Pf1N1B4_785 at 896.316 kb on - strand, within Pf1N1B4_785 at 896.316 kb on - strand, within Pf1N1B4_785 at 896.416 kb on + strand, within Pf1N1B4_785 at 896.417 kb on - strand, within Pf1N1B4_785 at 896.417 kb on - strand, within Pf1N1B4_785 at 896.417 kb on - strand, within Pf1N1B4_785 at 896.646 kb on + strand, within Pf1N1B4_786 at 896.647 kb on - strand, within Pf1N1B4_786 at 896.647 kb on - strand, within Pf1N1B4_786 at 896.970 kb on + strand at 897.063 kb on - strand, within Pf1N1B4_786 at 897.063 kb on - strand, within Pf1N1B4_786 at 897.138 kb on + strand, within Pf1N1B4_786 at 897.138 kb on + strand, within Pf1N1B4_786 at 897.138 kb on + strand, within Pf1N1B4_786 at 897.139 kb on - strand, within Pf1N1B4_786 at 897.139 kb on - strand, within Pf1N1B4_786 at 897.139 kb on - strand, within Pf1N1B4_786 at 897.164 kb on + strand at 897.281 kb on - strand at 897.281 kb on - strand at 897.409 kb on + strand at 897.410 kb on - strand, within Pf1N1B4_787 at 897.410 kb on - strand, within Pf1N1B4_787 at 897.746 kb on + strand at 897.747 kb on - strand at 897.765 kb on - strand at 897.798 kb on + strand at 897.812 kb on - strand at 897.822 kb on - strand at 897.823 kb on + strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.824 kb on - strand at 897.884 kb on + strand at 897.884 kb on + strand at 897.884 kb on + strand at 897.884 kb on + strand at 897.885 kb on - strand at 897.885 kb on - strand at 897.885 kb on - strand at 897.885 kb on - strand at 897.934 kb on + strand at 897.934 kb on + strand at 897.934 kb on + strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.935 kb on - strand at 897.942 kb on - strand at 897.942 kb on - strand at 897.942 kb on - strand at 898.130 kb on + strand, within Pf1N1B4_788 at 898.130 kb on + strand, within Pf1N1B4_788 at 898.130 kb on + strand, within Pf1N1B4_788 at 898.131 kb on - strand, within Pf1N1B4_788 at 898.131 kb on - strand, within Pf1N1B4_788 at 898.131 kb on - strand, within Pf1N1B4_788 at 898.176 kb on - strand, within Pf1N1B4_788 at 898.191 kb on - strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand, within Pf1N1B4_788 at 898.202 kb on + strand at 898.203 kb on - strand, within Pf1N1B4_788 at 898.203 kb on - strand, within Pf1N1B4_788 at 898.203 kb on - strand, within Pf1N1B4_788
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1 remove 895,606 + Pf1N1B4_784 0.81 -0.0 895,606 + Pf1N1B4_784 0.81 -1.8 895,606 + -1.9 895,606 + Pf1N1B4_784 0.81 -0.0 895,606 + Pf1N1B4_784 0.81 -2.1 895,606 + Pf1N1B4_784 0.81 -0.0 895,606 + Pf1N1B4_784 0.81 -2.0 895,607 - Pf1N1B4_784 0.81 -2.0 895,607 - Pf1N1B4_784 0.81 -0.0 895,607 - Pf1N1B4_784 0.81 -0.0 895,607 - Pf1N1B4_784 0.81 -0.0 895,607 - Pf1N1B4_784 0.81 -2.8 895,607 - -0.0 895,607 - Pf1N1B4_784 0.81 -1.9 895,607 - Pf1N1B4_784 0.81 -0.0 895,607 - -0.0 895,621 + Pf1N1B4_784 0.83 -1.0 895,621 + Pf1N1B4_784 0.83 -0.0 895,622 - Pf1N1B4_784 0.83 -0.0 895,670 - Pf1N1B4_784 0.88 -0.0 895,705 + -0.0 895,706 - -2.5 895,854 + -0.0 895,854 + -0.0 895,854 + -0.0 895,855 - -0.0 895,863 + -0.0 895,863 + -2.3 895,863 + -0.0 895,863 + -2.3 895,863 + -1.3 895,863 + -0.0 895,863 + -0.0 895,863 + -1.9 895,863 + -0.0 895,864 - -2.2 895,961 + -0.0 895,961 + -0.0 895,962 - -0.0 896,114 + Pf1N1B4_785 0.10 -1.8 896,115 - Pf1N1B4_785 0.10 -0.0 896,178 - Pf1N1B4_785 0.22 -0.0 896,178 - Pf1N1B4_785 0.22 -0.0 896,316 - Pf1N1B4_785 0.49 -0.0 896,316 - Pf1N1B4_785 0.49 -0.0 896,316 - Pf1N1B4_785 0.49 -0.0 896,416 + Pf1N1B4_785 0.69 -1.2 896,417 - Pf1N1B4_785 0.69 -0.0 896,417 - Pf1N1B4_785 0.69 -1.1 896,417 - Pf1N1B4_785 0.69 -1.3 896,646 + Pf1N1B4_786 0.10 -2.6 896,647 - Pf1N1B4_786 0.11 -2.2 896,647 - Pf1N1B4_786 0.11 -0.0 896,970 + -0.0 897,063 - Pf1N1B4_786 0.76 -0.0 897,063 - Pf1N1B4_786 0.76 -2.6 897,138 + Pf1N1B4_786 0.87 -0.0 897,138 + Pf1N1B4_786 0.87 -0.0 897,138 + Pf1N1B4_786 0.87 -0.0 897,139 - Pf1N1B4_786 0.88 -0.0 897,139 - Pf1N1B4_786 0.88 -3.0 897,139 - Pf1N1B4_786 0.88 -0.0 897,164 + -0.0 897,281 - -2.8 897,281 - -2.3 897,409 + -0.0 897,410 - Pf1N1B4_787 0.39 -1.9 897,410 - Pf1N1B4_787 0.39 -0.0 897,746 + -0.0 897,747 - -0.0 897,765 - -0.0 897,798 + -2.3 897,812 - -2.9 897,822 - -0.0 897,823 + -0.0 897,824 - -0.0 897,824 - -0.0 897,824 - -0.0 897,824 - -1.9 897,824 - -0.0 897,884 + -0.0 897,884 + -0.6 897,884 + -0.8 897,884 + -2.2 897,885 - -0.0 897,885 - -0.0 897,885 - -0.0 897,885 - -0.0 897,934 + -0.0 897,934 + -0.0 897,934 + -0.0 897,935 - -2.7 897,935 - -2.1 897,935 - -3.8 897,935 - -1.7 897,935 - -2.3 897,935 - -0.0 897,935 - -1.3 897,942 - -0.0 897,942 - -0.0 897,942 - -0.0 898,130 + Pf1N1B4_788 0.18 -0.0 898,130 + Pf1N1B4_788 0.18 -2.9 898,130 + Pf1N1B4_788 0.18 -0.0 898,131 - Pf1N1B4_788 0.18 -0.0 898,131 - Pf1N1B4_788 0.18 -0.0 898,131 - Pf1N1B4_788 0.18 -0.0 898,176 - Pf1N1B4_788 0.22 -1.9 898,191 - Pf1N1B4_788 0.23 -0.0 898,202 + Pf1N1B4_788 0.23 -0.0 898,202 + Pf1N1B4_788 0.23 -0.0 898,202 + Pf1N1B4_788 0.23 -0.0 898,202 + Pf1N1B4_788 0.23 -0.0 898,202 + Pf1N1B4_788 0.23 -0.0 898,202 + -0.0 898,203 - Pf1N1B4_788 0.24 -0.0 898,203 - Pf1N1B4_788 0.24 -0.0 898,203 - Pf1N1B4_788 0.24 -0.0
Or see this region's nucleotide sequence